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dib-lab
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khmer-protocols
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Hyperlink DOIs to preferred resolver
#164
katrinleinweber
closed
5 years ago
2
khmer-protocols/mrnaseq/3-big-assembly.txt trinity installation
#163
taylorreiter
opened
7 years ago
2
Initial version of variant calling protocol
#162
aditi9783
opened
9 years ago
0
[Acceptance] Installing khmer fails, setuptools doesn't exist, need to backport fix from Master
#161
bocajnotnef
opened
9 years ago
1
Removed newline in 3-big-assembly that broke .sh generation
#160
bocajnotnef
closed
9 years ago
0
3-big-assembly.txt contains a newline that breaks scan (acceptance)
#159
bocajnotnef
closed
9 years ago
1
Fixes #157, deprecated parameters when calling trinity assembler
#158
bocajnotnef
closed
9 years ago
0
Acceptance branch fails when calling Trinity; deprecated option
#157
bocajnotnef
closed
9 years ago
1
Fixes trinity install error and script breaking on clean system
#156
bocajnotnef
closed
9 years ago
1
Fixes trinity install error and script breaking on clean system
#155
bocajnotnef
closed
9 years ago
0
1-quality.txt breaks on clean systems
#154
bocajnotnef
closed
9 years ago
3
Update index.txt
#153
SherineAwad
opened
9 years ago
3
Fix chromosome bug
#152
SherineAwad
opened
9 years ago
0
Bring mrnaseq instructions up to date (under mrnaseq/)
#151
ctb
opened
9 years ago
3
Switch layout of kp site over to simpler single-pane layout?
#150
ctb
opened
9 years ago
0
Bring amazon instructions up to date
#149
ctb
opened
9 years ago
0
refTrans
#148
drtamermansour
opened
9 years ago
1
initial rackspace support & rootless install
#147
mr-c
closed
9 years ago
2
Ngs2014
#146
mr-c
opened
9 years ago
3
Bring master up to date with acceptance testing branch
#145
mr-c
closed
9 years ago
0
Fix minors
#144
SherineAwad
closed
9 years ago
0
Fix minors
#143
SherineAwad
closed
9 years ago
2
add diagnostic output; fix ref mouse
#142
mr-c
closed
9 years ago
1
Fix typos
#141
SherineAwad
closed
9 years ago
0
Merge indicator needs removal
#140
mr-c
closed
9 years ago
1
[acceptance] fix for change in NCBI site layout
#139
mr-c
closed
9 years ago
1
fix for change in NCBI site layout
#138
mr-c
closed
9 years ago
0
Missing directory while installing samtools (eelpond)
#137
GraceGanzel
opened
9 years ago
0
Update diginorm
#136
SherineAwad
closed
9 years ago
2
AWS docs specify m1.large/chapter 2 specifies m1.xlarge
#135
GraceGanzel
opened
9 years ago
0
New release of spades fixes old bug
#134
SherineAwad
closed
9 years ago
3
Normalize by median pct
#133
tshori
opened
9 years ago
2
Fix write-snps chromosome id bug
#132
SherineAwad
closed
9 years ago
3
Warning during normalize-by-median
#131
danbacastro
opened
9 years ago
5
blastall -> blast+; syntax via NCBI's legacy_blast script
#130
mr-c
closed
9 years ago
0
acceptance test failure in eel-pond/plot-expression.py
#129
mr-c
opened
9 years ago
5
Add quast analysis
#128
SherineAwad
closed
9 years ago
1
idba doesn't necessary produce scaffolds
#127
SherineAwad
closed
9 years ago
2
Try out CONCOCT on metagenomes
#126
ctb
opened
10 years ago
0
Add taxator-tk taxonomy to metagenome protocol
#125
ctb
opened
10 years ago
0
Assemblies crash because of memory issues.
#124
SherineAwad
opened
10 years ago
0
upgrade spades for nicer error messages
#123
SherineAwad
closed
9 years ago
9
Develop checklist for protocols release
#122
ctb
opened
10 years ago
0
remove >>head
#121
SherineAwad
closed
10 years ago
3
fix a formatting error
#120
SherineAwad
closed
10 years ago
0
Update Formatting
#119
SherineAwad
closed
10 years ago
6
Develop checklist for protocols code review
#118
ctb
opened
10 years ago
8
fix velvet setup
#117
ctb
closed
10 years ago
1
update write-snps
#116
SherineAwad
closed
9 years ago
3
A number of fixes to the metagenomics protocol
#115
ctb
closed
10 years ago
0
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