-
Hello,
First of all, thank you for the amazing tool! It has made spatial transcriptomic analysis with the CosMX so much easier!
I had an issue with the last two versions of/commits to Giotto sui…
-
In several places you copy an object, e.g.
```
if(isTRUE(copy_obj)) featMeta[] = data.table::copy(featMeta[])
```
but in the code path it is possible the object is not a data table, but an…
-
**Submitting author:** @matteocao (Matteo Caorsi)
**Repository:** https://github.com/giotto-ai/giotto-deep
**Branch with paper.md** (empty if default branch): paper
**Version:** v0.0.3
**Editor:** @os…
-
I followed the tutorial "http://spatialgiotto.rc.fas.harvard.edu/giotto.visium.brain.html".
However, when I ran addHMRF, I got the warnings"FileNotFoundError: [Errno 2] No such file or directory: '…
-
**Is your feature request related to a problem? Please describe.**
We shall think about submitting a short paper about the usefulness of giotto-deep
**Describe the solution you'd like**
I…
-
## Current Behavior
Every time I open Git Bash, I get this error.
```bash
CommandNotFoundError: Your shell has not been properly configured to use 'conda activate'.
If using 'conda activ…
-
Hi,
I pulled the latest docker image delron01/giotto:latest and it seems that libMagick is missing:
visium = createGiottoVisiumObject(visium_dir = data_path, expr_data = 'raw',
…
-
Thank you for creating such a promising tool!
I noticed a bug in the new Giotto suite: pDataDT() seems to stop working, creating problems for other functions depending on the cell_metatdata, such a…
-
Hi, thanks for adding in capabilities to analyze sub-cellular technologies. I am trying to follow the Vizgen tutorial on the website. Everything runs smoothly until the very last part which is plottin…
-
hi,
when i run this code:
mini_visium