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**Describe the issue**
When I use RepeatModeler for de novo repeat sequences finding, It said that the program could not open a *.translation file for reading, which was generated in the BuildDatabas…
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# Overview
We have a [database with units](https://github.com/sentier-dev/sentier_vocab), code for a [specific type of unit conversion](https://github.com/brightway-lca/brightway2-io/blob/main/bw2i…
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As we have already found a solution for the sequence number in qgep (https://github.com/QGEP/QGEP/issues/788) there is the same problem after migrating a qgep_database to tww_database: the sequence nu…
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- [x] ABORT
- [x] ALTER AGGREGATE
- [x] ALTER COLLATION
- [x] ALTER CONVERSION
- [x] ALTER DATABASE
- [ ] ALTER DEFAULT PRIVILEGES
- [x] ALTER DOMAIN
- [x] ALTER EVENT TRIGGER
- [ ] ALTER EXTE…
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It appears that currently the number of lanes for each kind of sequencer is hard-coded into the labman.db.process.SequencingProcess class at
https://github.com/jdereus/labman/blob/3cd014c1039a6554…
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How exactly does COMPSRA determine if a read maps to a circRNA? Does it specifically consider only reads that map to the splice junction? Otherwise, reads from linear mRNAs that map to an exonic seque…
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### Bug Report
| Q | A
|------------ | ------
| Version | 3.6.2
#### Summary
Schema introspection incorrectly parses sequences from namespace `public`, if current namesp…
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Tool users supply a taxonomy file when the data is processed by the tool to generate a dwc-a. Ideally, the `scientificName` is either a BIN, SH etc. and it is possible to include Linnean ranks with fu…
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There are ways to get sqlite to push events for perhaps easier and likely more efficient tailing.
From https://news.ycombinator.com/item?id=41285614 re: similar with postgres, sqlalchemy, celery ko…
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Hi!
Thank you for your great work! I have a question that whether I can download a pre-generated database and manually generate a fasta file containing all protein names and corresponding foldseek …