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Hi! I am trying to use arriba, but wiith some errors:
> Loading assembly from 'genome.fna'
> ERROR: could not find sequence of contig '10'
That was my Arriba command-line:
`arriba -c S9Chimer…
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We have generated CNV output from [ControlFreeC](http://boevalab.com/FREEC/) and [CNVKit](https://cnvkit.readthedocs.io/en/stable/), but are seeking individuals to determine consensus focal calls and/…
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"""
somatic/
1. single VCF/bedpe file
§ For structural rearrangements of all types detected by one or more algorithms.
Should be consolidated output of all structural rearrangement detection (dell…
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## Dynamo version
2.0.1.5055
## Operating system
W10
## What did you do?
Run the script with 2 packages:
- Structural Analysis
- Optimo
## What did you expect to see?
An resul…
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Hi!
I am currently trying to implement SVIM into a pipeline that requires [BEDPE](https://bedtools.readthedocs.io/en/latest/content/general-usage.html#bedpe-format) files as an input for misassembl…
Dfupa updated
5 years ago
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The older thread got too long.
What's the current specific bug?
Sorry these day I've been a bit distracted, a bit busy to collect big enough chunk of focus to say something meaningful. Regarding…
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- Operating System: Windows 10
- Node Version: 14.1.0
- NPM Version: 6.14.4
- webpack Version: 4.43.0
- style-loader Version: 1.2.1
### Expected Behavior
All imported CSS would be inline…
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I'm wondering what's the difference between `structural_vcf` and `sv_recovery_vcf` arguments? In previous versions I used to feed my manta output using `structural_vcf`, which if I understand correctl…
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As all of our sequencing data were aligned using UCSC genome specifically with hg19. We have tried (very hard) to make the compatible cache files, still unsuccessful. I am wondering whether someone ca…
gbnci updated
4 years ago
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Hi,
I'm running ABRA2 on WGS data ([30,80]x samples) and I get this error multiple time but each time on a different region.
`INFO Wed Mar 07 01:29:48 CET 2018 PROCESS_REGION_MSECS: 1_23…