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Hi salmon team,
I really like your tool and I was wondering if it is possible to output the raw k-mer count tables, that will probably be produced in some intermediate step?
Best,
Alex
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After using hifiasm to generate partially-phased assemblies (the `bp.hap?.p_ctg.gfa` files), I am confused about regions where the assembly is apparently missing for one of the two assemblies.
For …
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Hello,
I successfully ran verkko under local mode on one Arabidopsis sample but failed on another sample. My versions:
```
$ verkko --version
bioconda verkko bioconda 1.0
$ MBG --version
M…
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Hi all,
I’m new to GWAS and have run fsm-lite K-mer output through pyseer with mixed effect, fixed effect and elastic net models, correcting for population structure.
Here is my elastic net co…
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* bonobo chrX
snurk updated
2 years ago
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I am running the command `unitig-caller --call --refs refs.txt --pyseer --write-graph --threads 12` on a 30GB RAM machine. The .bfg_colors and .gfa files are generated successfully, but after the mess…
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Hi Mikko,
I was running MBG v1.0.8 on some raw Hifi reads from a cancer cell line that has two subclones. I was testing several parameters but this one gave this error:
`Parameters: k=1001,w=100,a…
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Hello,
I am still working with HIFI assembly graph. I am encountering an issue with this [subgraph](https://github.com/vgteam/GetBlunted/files/8163497/minimal_example.tar.gz).
As in #36 I am do…
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Reports of failures at the spades step in bugs
toolshed.g2.bx.psu.edu/repos/iuc/unicycler/unicycler/0.4.8.0
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Each run of bcalm I do, I find the *.unitigs.fa in the directory from which I used bcalm, while the .h5 files are in the right place (chosen with `-out-dir`). I tried finding how to fix it in the .cpp…