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Hi Jeffrey and Ryan,
I was testing the multiome pipeline following the tutorial below.
https://greenleaflab.github.io/ArchR_2020/Ex-Analyze-Multiome.html
However, I found out that at the impor…
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Hi, I'm an ArchR user that was directed to this repository https://github.com/GreenleafLab/10x-scATAC-2019 to perform CNV Analysis since the feature is not yet officially available in ArchR.
I post…
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I was going through the manual and tried to save my ArchR project using saveArchRProject(), and the following error occurred:
![image](https://user-images.githubusercontent.com/55997222/91921867-29dd…
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Hi,
Great paper, thanks for developing SEACells!
I'm trying to follow your approach to peak call on NFR fragments using the following functions in ArchR:
proj
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If I make a project and run `saveArchRProject` on it with a new directory, the GroupCoverage metadata still points to absolute file paths in the old project directory. Although the GroupCoverage files…
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https://mp.weixin.qq.com/s/jAkmtUW1BS44CWXEAHLzmA
ixxmu updated
2 months ago
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Hello, I copy the ArchR output to another computer, while plotEmbedding function does not work due to the working directory sorted in ArchR object.
[ArchR-plotEmbedding-6f082ce35ead-Date-2023-04-…
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We are going to include quality control of cells inside each dataset, I'm tagging all of you for having a few feedbacks before running quality checks by myself, thanks to everyone!
- [x] SCNMT : al…
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Thank you for developing such a great package.
I have 10x multiome productive data. But due to some special reasons, I have to use the peak matrix generated by macs2. So I don't have corresponding pe…
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Hello,
I was trying to update the package of Seurat. But it gave a error information at the "getAnnotation(reference = EnsDb.Hsapiens.v86, refversion = "hg38") " step.
> annotations