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chewBBACA seems to have some incompatibilities with Windows 10/Windows server.
1. The check for blastp fails, it works if --b flag is specified and 'blastp' is changed to 'blastp.exe' in the code. …
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In GitLab by @fbastian on Dec 24, 2015, 18:25
Our TopAnat mails are not delivered to google:
```
This is the mail system at host bioinfo.unil.ch.
I'm sorry to have to inform you that your mes…
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While working on a study comparing different approaches to query the neXtProt dataset, I have observed that Virtuoso returns wrong results in some cases.
If I create the table —
```
create tabl…
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Hi
I have downloaded the zip file from [this](https://zenodo.org/record/1254945/files/RahmanTeam/DECoN-v1.0.2.zip?download=1) location, and extracted it.
Then, in the folder I executed
`sud…
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Hi, I was wondering if the marker database you have (for mouse) has even been updated? I used SCSA about 6 months ago, and am going to be using it now. Is there a reason for me to update the scsa pack…
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java --jar $PICARD MergeVcfs I=${lib}"_Mutect2.vcf.gz" I=${lib}"_vardict.vcf.gz" O=${lib}"_picard_Variants.vcf.gz"
INFO 2023-03-09 15:33:31 MergeVcfs
********** NOTE: Picard's command line …
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# Quality Control
I generate raw-samples.txt which has the sample_name, R1 and R2 as columns.
```
# Get R1 and R2
ls 00-RAW/ | tr " " "\n" | paste - - > doc/tmp.r1_r2.txt
# Get sample names
…
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### Subject of the issue
Output seems incorrect.
### Your environment
On Linux, see output for version info
### Steps to reproduce
With this input:
```
$ head ~/t/eg.aln ~/t/eg_ref.fna
==>…
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For reasons I'm not going to go into I'm not using R that comes with the conda installation of cnvkit.
For my own R installation I have my R packages in a location that's indicated in ~/.Rprofile,…