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Discussion of input/output in new version.
What formats would you like to see supported?
Current proposal:
* Sequence formats: FASTA
Does anyone want or need FASTQ support? No one's ever …
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Currently we have a high level of the IA facets at https://embl-design-language.github.io/Springboard/information-architecture/#facet-structure-and-categories
They are:
```
1. Who
- people
…
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The genome paper was accompanied by a re-analysis of 240 RNASeq samples for the purpose of associative transcriptomics, looking at ash dieback response. this will take a bit of work to sort out RNASeq…
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Hello I have a gff3 file such as :
```
1 Geneious CDS 101 10548 . + 0 Name=1_ORF104;product=hypothetical protein
1 Geneious gene 101 10548 …
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Right now on the primary feature branch, we simplify background subtraction procedure to not use the drift correction. However, we should go back to trying to use this when other diagnostics are done …
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This recommendation was raised in the [review of the Poseidon paper](https://elifesciences.org/reviewed-preprints/98317v1/reviews#tab-content#tab-content).
> The BioSamples database (https://www.eb…
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I'm trying to install "matrixStats" package in conda by running `conda install -c bioconda r-matrixstats`. But it gives me the following error.
> UnsatisfiableError: The following specifications …
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We have seen cases where array design downloads fail silently, generating an file full of HTML errors instead of a proper design file, but not failing in the process: it should either exit with an err…
pcm32 updated
4 years ago
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The API provides both PEM and x509, the naming of this routine is a slightly unclear on which file is expected. Based on the name I thought it would want me to provide the x509, not the .pem. Thanks.
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Hello,
I was reading your paper and was very interested to apply this to my dataset.
DO you happen to have a wrapper script for this entire pipeline or a sequential order in how the scripts must b…