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**Background**:
[Genome Nexus](https://www.genomenexus.org/) [1] is a tool for the annotation and interpretation of mutations in cancer. [cBioPortal](https://cbioportal.org) leverages Genome Nexus' …
inodb updated
7 months ago
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**Hi,
I'm running LDJump with the following parameters:**
**results = LDJump("/store2/guzr/LDJump/run/data/chr16.SNP.Population.F9-return-rmHighDP.Nomissing.Kola.vcf", chr = 16 , segLength = 10000…
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Title: Case Study: Prolonged Infectious SARS-CoV-2 Shedding from an Asymptomatic Immunocompromised Individual with Cancer
# General Information
## Please paste a link to the paper or a citatio…
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Good luck!
Requirements
```sh
apt install \
libdbi-perl \
libdbd-mysql-perl \
curl \
zip \
build-essential \
zlib1g-dev \
libmodule-build-perl \
git
```
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**Describe the issue**
When running PureCN with my segmentation and VCF files, I encounter an error that says "Segmentation and VCF do not overlap." This stops the execution of the program.
**To R…
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Quite often I get this
![image](https://user-images.githubusercontent.com/44973249/129745063-13b47d84-087a-4734-a326-18338124c480.png)
it does not seem to be gene-specific (and is always for bot…
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Hello everyone,
We are interested in using SComatic to detect single-nucleotide mutations in single-cell data, for which we have tested the performance of the tool using scRNA-seq open data from tw…
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this issue is for bringing attention to specific search features or strategies that we want to incorporate into our search interface (for both the variant-centric and VTB views), to drive our data mod…
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Dear Mike,
Thanks for your previous help! I successfully run the tool on a human sample and get the output `IGHV_functional_allele_calls.txt`, but I am curious what does the output mean. Specifical…
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Is this currently supported if we input phased candidate variants?