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Hi ,
Is there any way to view PeptideShaker's project in Scaffold? I exported the PeptideShaker project as mzIdentML but when I tried to open the file in Scaffold, it complained that there is no deco…
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The specification document on the landing page is still linked to Version 1.1.0
1.2.0 is now published and passed the spec-doc (right?), so should be linked here.
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Hi,
this module looks really nice and i would really like to use it, but getting it to work with Python3.4 is giving me a hard time. Are there any plans to migrate/adapt the code to Python3.4, e.g.…
JB-MS updated
7 years ago
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When writing idXML, protein accessions for peptide hits are collected via `PeptideHit::extractProteinAccessions` (https://github.com/OpenMS/OpenMS/blob/develop/src/openms/source/FORMAT/IdXMLFile.cpp#L…
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```
Error: Unexpected internal error (the element 'Gln->pyro-Glu (Q)' could not be found)
```
is raised by this, kind of, minimal idXML.
If I change 'Gln->pyro-Glu (Q)' to 'Gln->pyro-Glu (N-term…
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Hi Guys, I noticed that Myrimatch scores were not reported in the mzIdentML output of PeptideShaker (I am running SearchGUI with tide, omssa, comet, xtandem, msgf+ and myrimatch). The other databases …
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I have tried to open mzid files directly in TOPPView and it fails with the message:
```
Cannot add a dataset that contains no survey scans. Aborting!
```
so it seems that TOPPView does not understan…
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Therefore, the tool is not easy to integrate into frameworks like Galaxy. Integration would be improved by an additional param where the input file format can be determined. Or is it also possible to …
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I new to BaseX. I am trying to execute a path which copied with CopyPath from the MAP in the editor:
e.g.
db:open("myrimatchSubset","20160312_17_B3_myrimatch_2_2_140.xml")/MzIdentML/SequenceCollecti…
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Good day all,
I am running an MSGF search with a particularly large dataset, and am experiencing errors with the output. It appears to finish the search perfectly fine, but is unable to write the …