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```
I have been using STAR with Illumina 101bp paired end reads. The first set of
libraries I sequenced work great going through the pipeline, but I have had a
very strange problem with the most rec…
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Dear Prof. Wang and other mates:
It has been a long time since I leave this project team. Currently, I am at a new lab and doing some work. Our RNA-seq data is very suitable for me to fully utilize…
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Please post below to request a review.
### TODO
* [ ] some example workflow
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Dear,
The gbff file in NCBI usually have follows format. There is all the sequence will be output when using `any2fasta` command, but how to just output the CDS sequence? Thanks.
```
LOCUS X…
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Contributors: @jennaj @griffinp @kpoterlo @yvanlebras @BoughAida @ssander5 @devikaatgit @cschu @tnabtaf @kmurat1
This issue is dedicated to Training Data hackathon group. The idea is to gather sample…
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Hello there,
thank you for developing and maintaining a great pipeline!
I'm now testing a variant call option on an RNA-seq dataset. Although I have 3 replicates, for this testing I just use 1 of …
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## Bug report
resume option works locally but not with azure batch. I've gone through all the troubleshooting steps and can't find the reason the cache is invalidated
### Expected behavior and…
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### Description of the bug
unzipping of fasta and gtf files fail, when I provide a relative path to those files. I can work around by either unzipping the file first, or by providing an absolute path…
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I am reporting an unusual behavior of EnTK as I was running a workflow with a synthetic workload (`sleep 5`) for a new use case. The program exists fine, indicating the tasks within the pipeline withi…
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The current script craps out on Sandeep's example dataset
```
Traceback (most recent call last):
File "/usr/local/packages6/apps/gcc/5.2/bcbio/0.9.6a//tools/bin/bcbio_nextgen.py", line 4, in
_…