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Hey guys!
So, I'm trying to correct my PacBIo DNAg reads, and I have about 70x coverage with Illumina short reads. But the thing is this set is divided between 180pb that can be merged, and 500bp tha…
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Hi,
Recently I tried to assemble several BAC clones one by one. All clones were sequenced by Hiseq2000.
At first, I mapped all reads to BAC and E. coli genome sequences and resultant bam files consis…
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Hello,
As the title says, this happens with ABySS, IDBA-UD, and MaSuRCA, but doesn't seem to affect the other assemblers in the imetamos workflow.
I tried building ABySS from source as well to see i…
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Hello-
Somehow when I specify only idba and spades to run as assemblers in the workflow file and on the command line, velvet still runs. Can someone suggest a solution? I can't uninstall velvet. This…
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I would like to put the binaries/tarballs etc. into a public location, separated from the source (Dockerfile), or use the original source (if they are trustable).
This will improve usability for us de…
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Hi.
I recently tried to run newbler in iMetAMOS.
I've installed newbler ifself before so I could run it without any trouble by just running iMetAMOS with "-a abyss,idba,sga,spades,masurca,velvet,newbl…
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Dear Sir.
Hello.
I have run iMetAMOS with several kinds of reads such as paired-end illumina, paired-end Sanger, single-end 454, and single-end Sanger.
iMetAMOS could work with my data but some assem…
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Hello.
I encountered another problem.
I almost finished every iMetAMOS step and could see Postprocess/out/html/summary.html
In that html page, Preprocess, Assemble, MapReads, Validate, FindORFS, Abun…
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Hi everyone,
I've been trying to run the test suite after installing metAMOS from the git clone of 1.5rc3.
```
$ git clone --branch "v1.5rc3" https://github.com/marbl/metAMOS.git
$ mv metAMOS/ metAM…
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hi, I have installed jellyfish along with MaSuRCA, but am getting the following error from jellyfish-2.0:
scott@biolinux3:~/software/masurca/bin$ ./jellyfish-2.0
./jellyfish-2.0: error while loading …