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### Describe the bug
@jeffng-or discovered this problem in https://github.com/The-OpenROAD-Project/megaboom/pull/84
To reproduce:
untar https://drive.google.com/file/d/1prc-4jBVJvfxHdZ4mr-dZSZU…
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khmer_env)ljcohen@c8-22:~/dammit$ dammit annotate A_xenica.Trinity.fixed.fa --user-databases protein.fa --busco-group metazoa --n_threads 4
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dammit! a tool fo…
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Hi,
is it feasable to use abricate for mass screening of protein sequences instead of genes (i.e. use tblastn instead of blastn)?
Thanks,
Carlus
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### Subject
[Flow] for any util, flow Makefile, or flow script issues.
### Describe the bug
regardless of the design [sky130hd, asap7, nangate45, ..] / [gcd, ibex, aes, ...] always stops afte…
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I'm trying to improve the frequency of my gate level multiplier when taping out on ASAP7. The slowest path after global routing was not the slowest path before global routing, and this path stands out…
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Hi,
I have successfully added an external database (CAZy) to the squeezemeta pipeline (using SqueezeMeta v1.6.3). However, I have noticed that the annotations are missing from the files 12.{sample}.C…
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Hi
I am having some strange behavior when using the easy-taxonomy with a query with only one contig. Here you can find the [contig](https://github.com/soedinglab/MMseqs2/files/6821433/477fb4bafa.as…
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hi there,
I am working on a viral genome, where the annotations (based on ribosome profiling) fairly often include >1 CDS per exon. Using `makeTxDbFromGFF` means that some of these CDSs get droppe…
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Hi!
Thanks for creating this useful tool.
I have an error that I cant solve, even using the new script uploaded 20 days ago.
My command is
perl NCycProfiler2.PL -d . -m diamond -f .faa -s pro…
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Hi! I hope all is going good!
I am trying to run gimme motif2factors (v0.17.1, installed through conda/mamba) on the genome of my organism to be able to run ANANSE. I set up a folder for a custom …