-
Moving [this](https://github.com/marbl/canu/issues/1586#issuecomment-587388733) into its own issue.
I am attempting to assemble a *Mycobacterium tuberculosis* sample (which I actually have Illumina, …
-
For bacterial genomes it is very fast to bwt_index and we do it on every analysis because the references change all the time, but we do not want lots of temporary files.
Would it be possible to acc…
-
**Hello
I'm trying to use this in our cluster and got an error while running a MAG.
(it was installed through conda)
here is the log file**
[2019-12-12 12:50:47] INFO: GTDB-Tk v1.0.2
[2019-12-1…
-
Hi!
Not really a problem here, just a curiosity question: I applied GTDB-Tk on 50 bacterial genomes, and a few of them were returned as archeal genomes, which was weird cause those bacteria had pre…
-
Hello,
I was wondering if bash can be used on windows 8 computer?
Thanks,
Shiva
-
Hello,
I am running Canu in a High Performance Computing cluster.
I used Canu for a bacterial genome assembly (draft) successfully.
I am trying to assemble another genome, but the job has failed…
-
Hi,
I was doing homologous analysis, I would like to extract the single-copy core gene from each genome using orthofinder output . How can I or some other tools realize it? thanks very much.
Yliub updated
4 years ago
-
When I provide a gbk reference input, I get the following error below. This did not occur using a fasta reference.
Thanks.
java.lang.RuntimeException: Error parsing property 'ref.AE015924.codonTab…
-
**Submitting author:** @SimonGreenhill (Simon Greenhill)
**Repository:** https://github.com/SimonGreenhill/phylogemetric
**Version:** v1.0.0
**Editor:** @arfon
**Reviewer:** @krother
**Archive:…
-
Hi
I was trying to get ANI value for 33 bacterial species ,but when I run the "average_nucleotide_identity.py" command system shows following error message.Please correct me If I am making any mistak…