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In order to test the feature _regulatory exome_ I
1. Checked out the latest version of VPV (05813531ca8ec6abe640d344efbb5c0379b7b5e8).
2. Created a new project _test_reg_exome_.
3. Created v…
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In preparation for ingesting epilogos tilesets, I tried converting two test epilogos BED files to multivec format using `conda` (Python v3.6.4) and `clodius` v0.7.4. The host is running Ubuntu Xenial …
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as identified in https://github.com/edamontology/edamontology/issues/292#issuecomment-314162572
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_@agitter is no longer updating the outline, we are no longer accepting new sections_
Of course you should feel welcome to contribute to sections that already exist. We're also looking for people t…
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Here I will be posting some drafts of figures + captions that I am making along the way. This will hopefully balance out some of my work when I begin writing a paper at the end of summer, and it's als…
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GeneReassigner works only on variants in "regulatory regions". But it does not reassign other non-coding variants in a TAD. Especially intronic variants. These variants should be reassigned:
- `CODING…
visze updated
7 years ago
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I'm trying to get new terms to describe some of the data in the FaceBase resource (this project is funded by NIH/NIDCR, website at facebase.org).
1. Suggested term name: Enhancer activity detection…
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SuRE-seq, the previous dataset I was working with, is fundamentally a promoter assay, and therefore it was hard to find many biologically relevant features other than GC content (which affects nucleos…
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- Create a UI element for faceting operation. This pane should be on the left hand-side. It should allow the user to adjust the pane width. The pane should allow scrolling horizontally and vertically.…
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I'm trying to get new terms to describe some of the data in the FaceBase resource (this project is funded by NIH/NIDCR, website at facebase.org).
1. Suggested term name: Chromatin modifier-associat…