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Dear Kraken2 developers,
thanks a lot for this fantastic software! I really appreciated adding the --report-minimizer-data flag (borrowed from KrakenUniq) to latest versions of Kraken2, because bre…
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* eggnog2gbk version: 0.0.7
* Python version: 3.8.2
* Operating System: CentOS Linux 7
### Description
Hi, I'm trying to use your tool with my output from eggnog-mapper v2
### What I Did
I…
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Hi there,
Congratulations on your tool - I'm really excited about PenguiN as this could be an interesting alternative to explore. As such, I've set out to compare it our group's gold-standard for e…
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I'll use this issue to document steps to build a `k=31,scaled=1000` index for SRA metagenomes. This is the same process used for the current `k=21,scaled=1000` index in branchwater.sourmash.bio, but c…
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I am using a custom amplicon panel for wastewater sequencing and would like to know the process of adding this to the primer sets folder.
E.g. The naming conventions needed and how to go about gene…
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Greetings,
I have been trying to install prodigal using cygwin. However, the installation seems to just stop once it reaches a point, as shown below. How do I rectify this problem?
user@DESKTOP-…
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Hi,
Thank you for the wonderful tool. I wonder if it is possible to modify VAE's loss function the following way.
Say in a binning job, as auxiliary information from alignment, we know that so…
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To talk about metagenomics integration into schema.
Field | Type | Options | Definition
-------|---------|----------- |--------------
`profiler` | `string` | | Can be any metagenomic profiler (i…
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Hi,
I'm using AMON in my metagenomic data. I have 79 MAGs, and in 70 I was able to run it without problems. But for 9 of them I get the following error. I believe that it may be due to a non-recogn…