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Dear all,
As mentioned last Thursday, a couple of economic variables could be added. For the energy models, these variables might not be used. However, for generating output, it might be good to a…
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`A user calls the plot method on an object to easily visualize their data.`
Add `plot` methods to the following scikit-bio classes (the type of plot will depend on the class):
- [x] `skbio.stats.dist…
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Each GET seems to initialize the `Taxonomy` model, and takes about 2 minutes on my laptop. The interaction with this object is read-only -- is there a reason it needs to be re-initialized on each call…
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In a current use case, I do _not_ care about the feature table and only about the rep-set and the rep-set metadata; thus, wondering if --i-feature-table should be optional. Thoughts?
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```
> library("phyloseq")
> packageVersion("phyloseq")
[1] ‘1.16.2’
> data("GlobalPatterns")
> ordinate(GlobalPatterns, method = "MDS", distance = "euclidean")
Error in 1:(zero.eig[1] - 1) : NA/NaN ar…
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Hi there, I was wondering how to use the argument `sample_color_order` in `amp_ordinate`? Could you please give an example?
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1. Bring data with metadata
2. Explore qiime2 capability and define analyses that can be performed on certain classes of data
3. Produce qiime2 command lines to produce at least once what we would …
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We need to tun our warnings and errors thrown by different static complication checks to be more useful. Using this issue to track which are useful/not useful.
## Spotbugs
### Useful
- LSC_L…
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## Issue Description
Current version of fb-contrib 7.4.3 has false positives when run against Java 11 compile code.
PCOA_PARTIALLY_CONSTRUCTED_OBJECT_ACCESS is one example (Constructor makes call …