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Hi,
The error "ZeroDivisionError: division by zero" is raised in Collapsinator.py, line 766, in collapsinator
counts['pc_uniq_dcr_kept'] = ( counts['number_output_unique_dcrs'] / counts['numb…
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Hi,
Using cnvkit, i made cnv scatter plot.
but the plot is weird like below.
…
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Hello Benjamin,
I've merged sequence tables of several `dada()` runs (in summary around 680 samples) and I am running the `collapseNoMismatch()` right now and it takes quite a while (it's running f…
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## The below issue(s) questions were raised by Pascal.
Hi,
As already discussed, there is little reason to work with the OSD raw reads (other than technical or QC questions), so within the scope of …
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@timrobertson100 @thomasstjerne @cmungall @pieterprovoost @79-6d
Following our meeting today, would you mind scoping out how you'll test exchanging a MIxS TSV for an attempt to auto-convert it int…
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### Overview
We are encountering some issues in obtaining appropriate estimates of error rates; I believe these problems are coming from our new(-er) sequencing facility sending us fastq files contai…
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Hello,
I am trying to do a cross domain analysis on a relatively big microbial dataset.
On one hand I have a bacterial abundance matrix with 7000+ columns (aka species) and 38 samples
And on …
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@david-dayan
This prompted me to discover an issue with markers that use the "-" symbol to code multi-snp probes or indels. At some point I thought these were codes for missing data, but looking at …
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We support a Contribution Annotation Framework that allows us to indicate roles of conributors. However, many tutorials still use the "old" style contribution metadata (without roles)
Updating this…
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