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Great. Now cytoBand is added when '-colsWanted 3' is set
> table_annovar.pl demo.v1.avinput -thread 12 ~/janssen4/bin/annovar/humandb/ -buildver hg38 -csvout -out demo -remove -protocol bed,cytoBan…
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Original title: ANNOVAR database flexibility
Make ANNOVAR databases user specified for ones that are updated frequently (Cosmic, Clinvar) so they are no longer hardcoded. Also check why we included…
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Hi!
I get this error when running InterVar:
It can't seem to find the annotation database: http://www.openbioinformatics.org/annovar/download/hg38_ensGene.txt.gz
Do you know what I can do about i…
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Hello, professor ,
I want to download 1000g2015aug hg38 version .
I check the source code :
'''
if dbs=="1000g2015aug":
file_name="ALL.sites.2015_08" # hg1…
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Error: the database file humandb/hg19_ljb23_all.txt is not present
getting this error while working with annovar. please help!!
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I was trying to use [ANNOVAR](http://annovar.openbioinformatics.org/en/latest/) annotated VCF with the Slivar comphet script.
I got the following error:
>[noak@nodecn201 cohort_level]$ ~/resources/…
nroak updated
4 years ago
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I'm trying to download annovar database using the following command, but the download is not working. Could you help me troubleshoot?
```
$ perl annotate_variation.pl -buildver hg38 -downdb -webfr…
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Dear Dr. Wang,
I encountered an issue when running table_annovar.pl in terminal.
perl table_annovar.pl 0fb608c4-5f79-4fad-a06e-4fa00ec3bfa0_impute-vcf-merged.vcf.gz humandb/ -buildver hg19 -ou…
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Hi TAs, I encountered a problem when running the **gatk Funcotator** in the annotation step.
The command line I use is:
```bash
gatk Funcotator --data-sources-path /lustre1/share/references/funco…
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Dear All,
I received your link for the subject download, but my attempt to download - by clicking on said link - failed with the following html message.
```
The page that you are trying to acce…