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Presented nipoppy today and felt the doc misses a very simple how-to, so I wrote this draft.
From: https://hackmd.io/5FMXnIO7SPCf8tlwgbVSWQ
# How to run MRIQC on a BIDS dataset with nipoppy
## Requ…
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I just installed oppni from the docker image and I cannot get it to run. The file has already run with several other apps that require bids format.
Suggestions would be greatly appreciated.
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Quite often projects do not adopt BIDS due to complexity or not perfect fit, and then establish new a file layout and/or metadata convention/standard while saying they are "BIDS-like". **The likeness…
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- [ ] add download and extraction of https://www.doc.ic.ac.uk/~ecr05/MSM_HOCR_v1/MSM_HOCR_v1-download.tgz
- [ ] update PATH to point to the Ubuntu MSM binaries
- [ ] add an command line option to chos…
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```
(dev3) @beast:~/containers$ docker run -it --rm bids/hcppipelines --version
HCP Pielines BIDS App version v3.17.0-18
(dev3) @beast:~/containers$ singularity run images/bids/bids-hcppipelines-…
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## Summary
In the two-compartment model that we use for multi-delay data, we need an estimate for the T1 of gray matter. At the moment, we use a single value across the brain; however, it would be …
tsalo updated
2 weeks ago
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Write a Dockerfile to containerize the dependencies and simplify usage as a BIDS App.
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I would like to see as part of the v2.0 standard, a concrete plan of action for creating a robust software ecosystem around BIDS. I believe that standards should come with as complete as possible tool…
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pybids version: 0.9.4
I have corresponding jsons and niftis in a BIDS folder from heudiconv, but nifti.get_metadata often returns a value that is the opposite of what the json contains.
```
In …
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BIDS is a structure for organizing data and metadata. There are some BEPs that go beyond this to do something quite different:
* BIDS StatsModels (BEP 002) is a specification of intended processing…