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nimh-dsst
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dsst-defacing-pipeline
Defacing algorithm to improve and evaluate accuracy for large datasets.
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Add --mode derivative,inplace option
#46
yarikoptic
opened
5 months ago
0
Should exit with non-0 exit code in case of failing, and likely even upon initial fail to run AFNI / fsl tools
#45
yarikoptic
opened
6 months ago
1
Should just skip a subject without anatomical
#44
yarikoptic
opened
6 months ago
0
Should not look under non-bids folders, or in particular under folder names with leading period
#43
yarikoptic
opened
6 months ago
0
Blows up with `KeyError: 'ses-02'` whenever that subject does not have T1w in any other session but one
#42
yarikoptic
opened
6 months ago
0
Gentoo based Dockerfile (presumably reproducible) to provide bids-app
#41
yarikoptic
opened
8 months ago
7
fsleyes render not working
#40
Arshitha
closed
6 months ago
2
major changes
#39
Arshitha
closed
3 months ago
2
-p flag not working
#38
Arshitha
closed
3 months ago
2
Adding DOI badge
#37
Arshitha
closed
1 year ago
0
Reduce environment size
#36
dmoracze
opened
1 year ago
1
final polish before defaced dataset is ready to be shared
#35
Arshitha
closed
11 months ago
0
Add an option to merge non-anat contents of orig dataset to defaced dataset
#34
Arshitha
closed
11 months ago
0
Add an anonymization flag
#33
Arshitha
closed
11 months ago
2
integrating generate renders to pipeline
#32
Arshitha
closed
1 year ago
6
Eric testing
#31
Arshitha
closed
1 year ago
0
Integrate into bids tree
#30
Arshitha
closed
1 year ago
1
Create pylint.yml
#29
Arshitha
opened
1 year ago
0
Update generate_renders.py
#28
ericearl
closed
1 year ago
1
Pipeline modified to enhance user-friendliness
#27
Arshitha
closed
1 year ago
0
Add a flag to dsst_defacing_wf.py cli to start swarm jobs from within the script
#26
Arshitha
closed
1 year ago
1
Generate modality specific 3D renders
#25
Arshitha
opened
1 year ago
0
Turn into Docker container for BIDS App
#24
ericearl
opened
1 year ago
1
Use python logging module instead of print statements to control verbosity
#23
ericearl
opened
1 year ago
0
Parallelize fsleyes render as well
#22
ericearl
closed
1 year ago
1
BIDS App preparation and serial/parallel behavior
#21
ericearl
closed
1 year ago
3
parallel execution at session level
#20
Arshitha
closed
1 year ago
2
Add progress bar while defacing is in progress
#19
Arshitha
opened
1 year ago
1
Replace FSL commands with AFNI equivalents
#18
Arshitha
opened
1 year ago
0
merging main to code refactoring
#17
Arshitha
closed
1 year ago
0
Improve summary output information
#16
Arshitha
closed
1 year ago
1
replace NIH HPC module load commands
#15
Arshitha
closed
1 year ago
1
Add docstrings for functions in deface.py and register.py
#14
Arshitha
opened
2 years ago
0
printing helpful summary info to stdout
#13
Arshitha
closed
2 years ago
1
adding a snippet of example bids tree to the README
#12
Arshitha
closed
2 years ago
1
adding examples of scripts' outputs
#11
Arshitha
closed
2 years ago
0
Add flag feature to automatically use all images as primary rather than doing the whole primary T1w dance and pony show
#10
dmoracze
closed
1 year ago
2
Flesh out the QC workflow, in text and sample images
#9
dmoracze
opened
2 years ago
0
Option to use all scans as primary for subject without a T1w instead of skipping over them
#8
dmoracze
closed
3 months ago
2
Add more helpful output to terminal
#7
dmoracze
closed
2 years ago
1
Add example mapping file
#6
dmoracze
closed
2 years ago
2
In README describe what the input dataset looks like (eg BIDS valid or, if not what?)
#5
dmoracze
closed
2 years ago
1
Pradeep's last name is spelled incorrectly in the README
#4
ericearl
closed
2 years ago
1
redesign the workflow using the same functions
#3
Arshitha
closed
2 years ago
0
Update 01_defacing
#2
ericearl
closed
2 years ago
2
Update 02_improve_defacing_accuracy.py
#1
ericearl
closed
2 years ago
1