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Remove all references to biosample.assay_type; it will be removed from the C2M2 specification and schema.
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Understanding of how to identify a biosample vs source material vs DNA sample (analyte) vs subsamples vs a globally unique ID
Some points/components that need clarification
1. PIs and researcher…
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When I run `entrez_search()` with `use_history` and `retmax = 5`, the function will respect this and return 5 UIDs:
```
biosample_uid
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Short term:
- #518
Long term, how should be relate `Biosample`s to other classes?
- Though direct slots like `part_of` for Studies?
- Through reified relationship classes?
- though tag-like…
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Hello and thanks for the great resource !
Currently the `samplingAge` property of `BioSample` has range `schema:Integer`. I assume the value is implicitely meant to be in years, which works for some …
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We really want a name, description, and type for contact, since thats what displays on the contact field by default.
![screen shot 2019-02-14 at 12 53 22 pm](https://user-images.githubusercontent.c…
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What claims would we like to make about the Biosample metadata presented in the NMDC MongoDB compared to NCBI?
Acknowledge that our Biosample Postgres database may be lossy esp wrt non-attribute me…
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During parsing the CDA biosample table, `CdaTableImporter` should compute the time of collection in Biosample using `days_to_collection` (biosample table) and `age_at_diagnosis` (Disease, Phenopacket …
ielis updated
7 months ago
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- `depth2` is being deprecated in https://github.com/microbiomedata/nmdc-schema/blob/issue-486-data-to-7-0 (which will actually result in a new version of the schema, greater than 7.0.0)
- the releas…
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Definitions
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All replicas will refer to the dataset (project) they are part of as one of their hubs.
TBD: Should we make the hub_ids field of each replica a list of entity references…