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_Please provide as much information as you can:_
* **non-proteinogenic amino acid biosynthesis**
* **Definition (free text)**
Biosynthesis of any substance characterized chemically as an amino…
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When `funannotate annotate` attempts to parse the `interproscan.xml` file it throws the error:
`Error parsing XML GO terms: None is not a valid term`
I checked the interproscan.xml file and it …
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Total time: 82.529 seconds.
Downloading http://cmprod1.cibio.unitn.it/biobakery3/metaphlan_databases/mpa_latest
Downloading file of size: 0.00 MB
0.01 MB 31507.69 % 55.07 MB/sec 0 m…
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Hello,
I have a database biosynthetic gene cluster (BGCs) from different bacteria. BGCs are clusters of adjacent genes which is part of whole genome of the bacteria. I used GTDB-TK to make a phylo…
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Hello, I would propose to obsolete the following biosynthetic process terms:
- [x] GO:1900566 ‘chanoclavine-I biosynthetic process’
Chanoclavine-I is an intermediate in the biosynthesis of fumigac…
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Hi,
Thanks for the development of such an amazing tool.
I am curious about the distance calculation of BGC pair. Where could I find the calculation formula?
Thanks.
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funannotate v1.8.12
`Funannotate annotate` failed when I included the argument `--antismash /path/to/annotate_misc/antiSMASH.results.gbk` because the file did not exist. I dug into it and discovere…
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Hi there,
I've been using STAR for a while now, but I have some new GTF files from a collaborator which give this out of range error during the indexing step.
Upon reading previous posts about simil…
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**Is your feature request related to a problem? Please describe.**
Extract module nucleotide co-ordinates for NRPS coding ORFs. Since v5 module co-ordinate inference has become difficult due to lack …
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Ubuntu 20.04 (WSL)
Hi, I've installed BiG-SCAPE and CORASON successfully.
When running BiG-SCAPE it appears to be no problem as I can visualize with no troubles the index.html file.
However, …