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Please complete this report in full and as much detail as possible. It will help with getting the bug fixed far sooner!
## Describe the bug
While retrieving protein sequences from NCBI, if the Bio…
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Hello
I just installed DRAM with conda on a fresh miniconda3 install on two independent HPC's
After running the ```DRAM-setup.py prepare_databases --output_dir DRAM_data``` step, I get the foll…
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**Are you using the latest release?** Yes
**Describe the bug**
I am missing the annotation of certain genes which seem to be not properly parsed by EggNog. Please any advice would be helpful I'm a…
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Hello!
I ran DRAM on a bunch of isolate genomes, and now the "gene.faa" file contains all the predicted proteins merged. I wanted to split them back by genome using `DRAM.py strainer` options `--fa…
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Hi,
I ran the latest dramv on putative vMAGs obtained from both virsorter2 and vibrant, followed by dereplication at 0.99 with CD-HIT to get putative vMAGs. I was hoping to include vMAGs identifie…
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## Is your feature request related to a problem? Please describe.
By making the default operation of `cazy_webscraper` be "download all of CAZy" it is very easy for users to overwhelm the service, …
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Hey! First of all thank you for writing this awesome tool.
I ran it on some genes and noticed that where there is a CAZy hit there is actually a super long list of them. For example, this is the CAZy…
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## Describe the bug
The current version of `cazy_webscraper` at `PyPI` is reported as [0.1.6](https://pypi.org/project/cazy-webscraper/)
The current version of `cazy_webscraper` at `bioconda` is…
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I have before visualised reactions on VMH Recon Map (with the help of Cobra toolbox tutorial). I would now also like to color metabolites, but I found no appropriate tutorial.
I have tried to use met…
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**Describe the bug**
The tutorial at []() suggests the following command should download a subset of CAZy families:
```bash
cazy_webscraper.py --families GH2,PL5,CE1,CE2,AA10
```
but it pro…