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Hi there, thank you for this amazing tool. My team as been using it a lot (see issue #265) but when I try to reproduce the analysis I came up with a few questions.
I did 10x genomics kit 5` GEX an…
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IN:05606676
Our latest is 6.0.1.
Install procedure is mostly untarring.
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Here is some comment about the documentation [here](https://github.com/neurohub/neurohub_documentation/wiki/Cellranger-Count):
- For the [section2](https://github.com/neurohub/neurohub_documentatio…
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### Description of feature
This issue is to provide an overview of different tools and related sub-issues related to supporting multiple modalities:
- CITE-seq (=RNA+protein) (https://github.co…
grst updated
4 months ago
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Hello,
I have also been researching the GSE139136 scATAC-seq data recently. However, after downloading the files from SRA and running fastq-dump, I only obtained the paired-end sequencing files SRR…
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### Description of feature
I am currently looking into using scrnaseq for a clinical trial. In our setup we have GEX, FB, and VDJ data for several patients which are hashed using Totalseq-C. Curren…
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### Description of feature
For the sake of debugging failed `CELLRANGER_COUNT` processes, it would be helpful if `cellranger_count.py` removed any existing output directory so that `.command.run` can…
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Hi Loyale,
Thanks for your nice work about mouse retina! I'd like to explore these data for my study, but I am confused with them.
1. After download and fast-dump sra file from GSE118614, I only…
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I'm trying to use ChromVAR to read in output from the 10X cellranger-atac pipeline. I believe I have it working when reading in the peak_bc_matrix as my own count table, but I'd also like to use chrom…
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I attempted to analyze BCR sequencing data generated using the GEXSCOPE® Single-Cell Immune Receptor Library Construction Kit with the multi_vdj_full_len tool. However, I encountered an error during t…