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It seems the scheduling code does not feed arguments to change the chromatin fraction through to job scheduling properly. When I enter the "--chain-generator-C 0.3" argument, I get a crash and the sim…
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Hi,
When following the protocol `Kim, S.H. et al. (2023). Simultaneous Single-Cell Profiling of the Transcriptome and Accessible Chromatin Using SHARE-seq. In: Marinov, G.K., Greenleaf, W.J. (eds) Ch…
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# 1. 可能是 ATAC-seq 方法的原始文献 (nature methods, 2023)
https://www.nature.com/articles/nmeth.2688
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-bi…
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https://dx.doi.org/10.1093/bioinformatics/btq248
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Hi, @ay-lab
Here's a question I'd like to get your advice on.
FitHiC is able to use the raw/iced matrix file information generated by HiC-Pro as input to look for biologically significant chroma…
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Hello!
I want to know the method of drawing metaplot like this,the width of each box correlates with the chromosome length.
![C@@6W%DOO @)A(UH`S1~$WN](https://user-images.githubusercontent.com/8010…
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Hi,
missing ATAC components include:
- [ ] ATAC-specific QC metrics (TSS, nucleosome_signal,...) see https://www.sc-best-practices.org/chromatin_accessibility/quality_control.html#calculatin…
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For other purposes I wanted to get a single chromatin effect score for each SNP from what I can tell if
X = num_variants
then for each SNP i then the forward and backward strands are at index …
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Hi, the websit is amazing.
However, errors have occured when I selected ubiqitious or multiple gene lists.
Could you fix the problem?
Thanks!
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editor preferred term: single-nuclei ATAC-seq
alternate terms: snATAC-seq
textual definition: Analysis of the transposase-accessible-chromatin in single nuclei isolated from frozen tissue samples th…