lhilbert active-microemulsion issues

lhilbert / active-microemulsion

Package for the lattice-based simulation of active polymer microemulsions, such as dense DNA suspensions

BSD 2-Clause "Simplified" License

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issues

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Scheduled events are not properly applied

#36 lhilbert opened 5 years ago
2
Compiler error on icc for threadprivate OMP pragma for random number gens

#35 lhilbert opened 5 years ago
2
Occasionally, the chemical reactions keep running on when total simulation time is exceeded

#34 lhilbert opened 5 years ago
0
Changes to chromatin fraction in chain generation lead to crash

#33 lhilbert opened 5 years ago
2
PGO optimization only 50*50 works

#32 lhilbert opened 5 years ago
3
Spatial anisotropy in simulation results

#31 lhilbert closed 5 years ago
3
Unclear what is meant by "copy libiomp5.so" locally

#30 lhilbert closed 5 years ago
1
How are two events that occur at the same time ordered?

#29 lhilbert opened 5 years ago
2
Hard-coded occurrencesof flavopiridol flag?

#28 lhilbert closed 5 years ago
1
Changes in simulation parameters lead to incomplete runs

#27 lhilbert closed 5 years ago
5
Bug in scheduling flavopiridol inhibition timing?

#26 lhilbert opened 5 years ago
1
Segfault when using boost version 1.61

#25 churli opened 5 years ago
1
Hick ups during setup and execution on bwUniCluster

#24 lhilbert closed 5 years ago
7
Build with make: dependency not found

#23 lhilbert closed 5 years ago
1
Instructions how to build and run on SCC (or other) cluster

#22 lhilbert closed 5 years ago
2
Migrate runSimulationSet.sh to Python

#21 churli closed 5 years ago
0
Update the TXN_SPIKE behaviour to match new specifications

#20 churli closed 5 years ago
0
Change behaviour of TXN_SPIKE events

#19 churli closed 5 years ago
1
Additional snapshots

#18 churli closed 5 years ago
0
Add support for per-cell setting of the inhibited flag in chain configuration

#17 churli opened 5 years ago
2
Crash with SIGABRT if --kRnaPlus 4.4444e-1 passed

#16 churli closed 5 years ago
1
Refactoring + new features

#15 churli closed 5 years ago
0
Rewrite Logger to use variadic templates

#14 churli opened 5 years ago
0
First column of visualization output is always Chromatin

#13 churli closed 5 years ago
0
Design random number generation approach which is compatible with parallelization

#12 churli closed 5 years ago
2
Implement "coloring" scheme on the 2D grid for parallelization

#11 churli closed 5 years ago
0
Improve Actinomycin D behaviour

#10 churli closed 5 years ago
1
Visualization of accumulated RNA levels

#9 churli closed 5 years ago
1
RNA accumulation

#8 churli closed 5 years ago
0
Develop tool for generating chain configurations

#7 churli closed 5 years ago
0
Add support for config-file-based chain initialization.

#6 churli closed 6 years ago
1
Add support for sticky boundary

#5 churli closed 6 years ago
1
Add unit tests

#4 churli opened 6 years ago
0
Add support for chemical reactions network.

#3 churli closed 6 years ago
1
Results with negative omega (w) parameter do not look right.

#2 churli closed 6 years ago
1
Compiling on macOS

#1 lhilbert closed 6 years ago
1