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lhilbert
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active-microemulsion
Package for the lattice-based simulation of active polymer microemulsions, such as dense DNA suspensions
BSD 2-Clause "Simplified" License
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Scheduled events are not properly applied
#36
lhilbert
opened
5 years ago
2
Compiler error on icc for threadprivate OMP pragma for random number gens
#35
lhilbert
opened
5 years ago
2
Occasionally, the chemical reactions keep running on when total simulation time is exceeded
#34
lhilbert
opened
5 years ago
0
Changes to chromatin fraction in chain generation lead to crash
#33
lhilbert
opened
5 years ago
2
PGO optimization only 50*50 works
#32
lhilbert
opened
5 years ago
3
Spatial anisotropy in simulation results
#31
lhilbert
closed
5 years ago
3
Unclear what is meant by "copy libiomp5.so" locally
#30
lhilbert
closed
5 years ago
1
How are two events that occur at the same time ordered?
#29
lhilbert
opened
5 years ago
2
Hard-coded occurrencesof flavopiridol flag?
#28
lhilbert
closed
5 years ago
1
Changes in simulation parameters lead to incomplete runs
#27
lhilbert
closed
5 years ago
5
Bug in scheduling flavopiridol inhibition timing?
#26
lhilbert
opened
5 years ago
1
Segfault when using boost version 1.61
#25
churli
opened
5 years ago
1
Hick ups during setup and execution on bwUniCluster
#24
lhilbert
closed
5 years ago
7
Build with make: dependency not found
#23
lhilbert
closed
5 years ago
1
Instructions how to build and run on SCC (or other) cluster
#22
lhilbert
closed
5 years ago
2
Migrate runSimulationSet.sh to Python
#21
churli
closed
5 years ago
0
Update the TXN_SPIKE behaviour to match new specifications
#20
churli
closed
5 years ago
0
Change behaviour of TXN_SPIKE events
#19
churli
closed
5 years ago
1
Additional snapshots
#18
churli
closed
5 years ago
0
Add support for per-cell setting of the inhibited flag in chain configuration
#17
churli
opened
5 years ago
2
Crash with SIGABRT if --kRnaPlus 4.4444e-1 passed
#16
churli
closed
5 years ago
1
Refactoring + new features
#15
churli
closed
5 years ago
0
Rewrite Logger to use variadic templates
#14
churli
opened
5 years ago
0
First column of visualization output is always Chromatin
#13
churli
closed
5 years ago
0
Design random number generation approach which is compatible with parallelization
#12
churli
closed
5 years ago
2
Implement "coloring" scheme on the 2D grid for parallelization
#11
churli
closed
5 years ago
0
Improve Actinomycin D behaviour
#10
churli
closed
5 years ago
1
Visualization of accumulated RNA levels
#9
churli
closed
5 years ago
1
RNA accumulation
#8
churli
closed
5 years ago
0
Develop tool for generating chain configurations
#7
churli
closed
5 years ago
0
Add support for config-file-based chain initialization.
#6
churli
closed
6 years ago
1
Add support for sticky boundary
#5
churli
closed
6 years ago
1
Add unit tests
#4
churli
opened
6 years ago
0
Add support for chemical reactions network.
#3
churli
closed
6 years ago
1
Results with negative omega (w) parameter do not look right.
#2
churli
closed
6 years ago
1
Compiling on macOS
#1
lhilbert
closed
6 years ago
1