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Maybe not relevant yet, but I wanted to put some thoughts on this together.
Omnideconv has quite complex dependencies (R packages, python, and docker(/podman/singularity), so we need to make sure …
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Dear Professors,
Thanks for coming up with this great tool. However, I'm confused with how to use it by the tutorial. In PDAC deconvolution, the tutorial only uses the train_vae function, however,…
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Hi,
Thanks for providing this useful tool! I tried to run tutorial but with the following error
```
MAESTRO scrna-init --platform 10x-genomics --species GRCh38 --cores 8 --rseqc --directory pbmc_…
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Hi everyone,
I'm trying to run the TIMER deconvolution method on a set of lung normal & tumor RNAseq data, using the following line:
`res_timer = deconvolute( tpm , "timer" , indications = rep( "l…
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Please briefly describe your problem and what output you expect. If you have a question, please don't use this form.
Instead, ask on our [Community Forum](https://github.com/icbi-lab/immunedeconv/dis…
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Dear Xuran,
I first tried to install the package in the suggested way without success:
> devtools::install_github('xuranw/MuSiC')
Error in read.dcf(path) :
Found continuation line starting ' …
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Thank you for creating such a wonderful tool. Quick question - I read the BayesSapce paper and I am a bit confused - can this tool be used without a reference scRNAseq data. or do I ultimately still n…
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https://mp.weixin.qq.com/s/rK7FFQuEPKpEU6qYbVB4Rw
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Last @jburos 12/12 status report issue. More detail please!
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It would be useful to be able to specify custom signature matrices.
Originally proposed by Sonja Hänzelmann via email and also mentioned as one of the "masked options" by @jracle85 in #14.
Pro…