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````
(base) zhou2@zhou2-Super-Server:~$ conda activate kn
(kn) zhou2@zhou2-Super-Server:~$
(kn) zhou2@zhou2-Super-Server:~$ /home/zhou2/soft/NCLscan-1.7.0/NCLscan.py
usage: NCLscan.py [-h] [-c …
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Hi Franziska,
Sorry to bother you again. And thanks for the amazing paper and this repo!
Ive been looking through the script here and the data and Im trying to reproduce Figure 2 and S2, basical…
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### Description of the bug
Hello!
I am trying to solve the following error, but I am not able to use the parameter `--limitSjdbInsertNsj` to resolve it.
Thank you very much for your time and …
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Hi,
As there are no tools to simulate the circRNA reads. So in your paper, you used nanosim for simulated reads. Can you just simplify the process of simulation which you did in your paper. I just wa…
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Dir Sir, I tried to run DCC, but I failed every time at step 'Filter by non repetitive region'.
Could you help me to fix it?
Here is the command:
/data/suyao/tools/build/bin/DCC @/data/suyao/proje…
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I used this command:-
nohup circmimi_tools interactions -r /Drive1/interactome_circRNA_miRNA_mRNA/ -i /Drive1/interactome_circRNA_miRNA_mRNA/checking_circRNA/E6_coordinate.tsv -o circ_interactome -p …
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Hello,
I have a question regarding whether or not there is a limit to the number of samples used with the CIRI_DE_replicate command in the differential expression portion of the CIRIquant pipeline…
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for me it seems like primex likes to design primers inside introns that are not part of the circRNA, but are between the exons in the genome sequence:
circRNA candidate : hsa_circ_0077535 : chr6:10…
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**进行该任务需要基本掌握 Linux 操作**。 @JianGuoZhou3
> 问题反馈和交流请联系诗翔 @ShixiangWang 。
>
> 后续跟进实际问题进行补充 QA 和视频交流。
## 1. 准备
1. 获取对应服务器的 CircRNA 账号:目前建国有 2 台服务器已经安装和配置过 circrna-pipeline 流程,使用者根据对应数据存储的服务器,获…
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Hi again,
I would like to know if the number of times a circRNA is repeated in each read (which I think you call CCS copy number) is reported somewhere in the output of CIRILONG. Mi idea is to get …