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FigureFirst looks like a very exciting project, your have identified a major pain point for many people.
I was looking through the documentation, and I was wondering if you had any suggestions for …
jfear updated
5 years ago
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Hi,
I am having a problem with clustering a data set. The data has been extensively filtered before clustering to remove uninteresting samples, so I would expect that the vast majority of samples c…
Phlya updated
5 years ago
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Hi! in the cell clustering notebook I am trying to make a heatmap, but not all columns and rows are assigned a label:
![image](https://github.com/angelolab/ark-analysis/assets/50010499/98968074-d8…
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Helix based cluster manager does not dynamically recognize newly added nodes. It assumes that `InstanceConfig` change notifications come in only for nodes that it already knows of. When such notificat…
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Hi,
In the important notes section, you wrote that any redirection to data outside the notebook would result in a lowering of the grade. but you also mentioned that we should include figures. Can we …
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### Report
Thank you for your wrapper for copykat, very useful!
I was wondering what can be done to remove values over 1e9 from the plot?
I use the following code on my dataset:
```
infercnvp…
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Here is what I tried:
```
cd examples/satellites;
(echo ".hook ../../bdbcontrib/contrib_util.py" && \
echo ".hook ../../bdbcontrib/contrib_plot.py" && \
echo ".hook ../../bdbcontrib/contrib_math.py…
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Hello pyscenic,
For the heatmap (coding below), is it possible to sort it by cell type colors? I mean the cells from the same cell types aggregate together to make the color bar in an ordered patte…
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- I have checked that this issue has not already been reported.
- I have confirmed this bug exists on the latest version of scanpy.
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### Minimal code sample (that we can copy&paste without…
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Hi there,
I used your package to review some publication work. It is really a fantastic work. May I suggest some new features about the plotting part.
The genes in the heatmap for each gene set …