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Looking at the example of patchy connectivity in the CSA paper (see #72), reminded me of a connectivity pattern I will need for one of our models. Similar (if not the same) to the patchy connectivity …
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### Description of the issue:
Traditionally, identifiers have been used to encode various types of information, e.g., a metabolite's compartment. While this approach might lead to recognizable disp…
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Hello,
Congrats on this very interesting work. Up to now I have written my own Stan program for Bayesian analysis of compartmental epidemic models, like the SEIR. A typical ODE system involves 18 s…
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title
E3V3A updated
4 years ago
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請問可以咨詢這個R0的計算方法嗎,Next Generation Matrix,沒有看懂這個NGM方法,請問可以解答一下或者提供一些文獻嗎?謝謝您!
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As part of the full package review (#33) the dots (`...`) were removed from the simulation functions (`sim_linelist()`, `sim_outbreak()` and `sim_contacts()`), as they were not used and would warn if …
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Hi, I am having trouble understanding how BioNetGen processes the following model:
`model.bngl`
```
begin model
begin parameters
k1 2
k2 3
end parameters
…
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Ola gente, tudo bem ? Sou novo aqui, e também não sou da área sou físico. Bem topei com um post falando desse projeto no Reddit e fui dar uma olhada nesse SEIR model. Fiquei ciente da dificuldade desc…
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I picked up an issue when species are in conc, and output is in conc as well, with a model that has compartments (even only a single compartment) with a volume other than 1.
Illustrated with a simp…
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CC: @OCNS/software-wg
Saw the pre-print, and I think a software highlight would fit well for this:
[Dendrify: a new framework for seamless incorporation of dendrites in Spiking Neural Networks …