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Hi,
I have some questions about solving the generalized eigenvalue problem using PRIMME.
I am solving for the largest magnitude eigenpair of `Ax = λBx`, using the massMatrixMatvec parameter in PRI…
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Sometimes HiC data is stored in memory, in R in my case, as an actual matrix. It would be great if HiGlass supported matrix -> cooler conversion, preferably by allowing users to write their contact m…
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@Sharjeeliv
Hello Sharjeel, this issue page is created for the task of time series forecasting for user similarity matrices. Here is the detailed explanation for this task:
When UML (user modelin…
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We currently only do quasi time stepping, which simplifies a lot of things.
For actual time stepping we need further things like:
- time related matrices
- event management (contact)
- adaptivit…
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from feedback "More time to be familiar with {socialmixr}, structure of contact data. More familiar with functions"
Also, we can show flexibility of the social contact matrix to any input different…
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When running the `python setup_for_alphafold.py` script, the alignment performed by `tcrdock.sequtil.blosum_align` involves the deprecated `Bio.SubsMat` module, triggering the following warning at the…
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Dear authors, I am trying to reproduce the results in your publication and I was wondering if you can you please provide the structures and the corresponding code to reproduce the generation of the ma…
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Hi Henrik
Thanks for having released this `matrixStats` R package, it looks very useful. I'm currently working on calculating the statistical similarity between matrices, and I was wondering what are…
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Add ability to include known household age distributions as offsets in the 'home' setting model, in place of the whole population distribution (pop_age_to)
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Hello,
I would like to access the .h5ad data files for analysis with python.
I tried downloading the .h5ad files from the AWS bucket, but these files are on GLACIER storage. I don't have the per…