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I'm refering to the qiime v2022.2 pipeline.
Once you get to the portion of the analysis where you have the dada2 results for each subset EUK/PROK we have to add taxonomy to the reads one more time.…
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benchmarking: https://github.com/dib-lab/2022-branchwater-benchmarking is great but is a bit too heavyweight. (note that https://github.com/dib-lab/2022-branchwater-benchmarking/issues/9 may be revea…
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Hi @fpusan @jtamames @ggnatalia
I am using squeezemeta to analyse my samples individually using the sequential mode. Thing is I am using a cluster that uses PBS job sceduler. I request a lot of nodes…
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I updated my lake models of Lake Mendota to the most recent GLM-AED GitHub versions, but I am getting now different results for water quality variables while running it on the exact same model setup. …
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## THE INTERNATIONAL FOSSIL PLANT NAMES INDEX (IFPNI)
Dataset link: http://fossilplants.info/about
Region: global
Taxon: plants, algae
Type: checklist
Why is this important: Fossils are a large g…
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These are just some thoughts, free to ignore if you've considered them already or if I'm misunderstanding how autometa does taxon assignments
If I understand it right, currently Autometa uses som…
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Hello! I have created a new GraftM package using "graftM create;" I followed the sample protocol on the Wiki to do so. I am now trying to run "graftM graft" using my output package. I keep getting the…
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The [2011 Ondov et al. BMC Bioinformatics paper](http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-12-385) says, _For categorical variables, users may define the color of every no…
DWgit updated
4 years ago
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It would likely be best if the default privacy setting for creating marker lists or adding genomes was public. In general, we are looking to share our data across ACE and build synergy between differe…
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