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Hi,
I'm following the ["Workflow for Microbiome Data Analysis"](http://web.stanford.edu/class/bios221/MicrobiomeWorkflowII.html) to analyse some 16S and ITS datasets. I'm unsure about the effects t…
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Hi Chen,
I have no issues with the package and I was able to carry out my analysis without having any hitch. However, is it possible to increase the font size of the image generated especially from t…
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Related to https://github.com/VEuPathDB/microbiomeComputations/issues/22 and https://github.com/VEuPathDB/EdaNewIssues/issues/600
The solution we're proposing for both of these is to have the compu…
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I've written a model that should be able to simultaneously control for and assess alpha diversity, overall beta diversity, and individual differential abundances and prevalences. I'd like to test it o…
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Mild atopic dermatitis is characterized by increase in non-staphylococcus pathobionts and loss of specific species – Lize Delanghe – Scientific Reports
https://www.nature.com/articles/s41598-024-74…
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Hi,
Thanks for creating this package. I'm currently seeking to apply it to my microbiome project. I'm a bit confused about the recommended use as there are functions within the separate R scripts a…
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What could be the meaning of this error. May metadata file seems to be okay but this is the result I get when I run the ggpicrust() func.
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### Description of the bug
Hello,
I am trying to run GSEA but I get an error when trying to process the GMT file I obtained from MSigDB.
Previously, I have executed the pipeline without the G…
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**Addition Description**
I have a use case where I would like to compute the ILR transform on an entire tensor of (samples) x (features) x (monte_carlo_estimates). Doing so would open the doors for …
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Hello,
I have some general issue questions, so I apologize if this is page is meant more for specific technical issues.
I have run ConQuR and everything worked well and the batch effect was mod…