-
I am attempting to basecall using dorado, and I had a question regarding which kit I should provide as part of their `--kit-name` flag when using `dorado basecaller`.
In my library preparation, I …
-
@Starnite: all the best for your finals! I'm going to leave here one research questions and one coding challenge that will be useful for this work.
1. Say you're given a set of `n` full-length PB2 …
-
When `
--config dna_r10.4.1_e8.2_400bps_5khz_modbases_5mc_sup_prom.cfg` is given as the model, this doesn't say what the model version is for matching with clair3 variant calling models.
To fix th…
-
Dear brocklab research group:
You did an excellent job in the field of lineage-tracing. Our research group is using the technology you developed to construct the ClonMapper library.In or…
-
The mediawiki text living at http://software.mooreabiocode.org/index.php?title=Main_Page has been transferred to this wiki. To complete the porting, we need to manually download all images referenc…
-
Dear authors,
Please provide information needed to execute your pipeline:
1) what is the format of the samplesheet
2) how can one know barcodes before running any analysis?
3) What is BARCODE_STAR…
-
Hello,
I sequenced four samples with the Rapid Barcoding kit, and of course generated very little data (3GB), and an extra-run, generated 120 MB.
I basecalled the extra-run using this code:
```…
-
Same as the Slack message:
Dear ECA nodes, the Biodiversa+ call was launched https://www.biodiversa.org/1772 and is open for the submission of preproposals until November 30th. I briefly discussed ma…
-
Hi Heidi
I see that you added Prolabiscinae on DSF:
https://dermaptera.speciesfile.org/otus/887932/overview
Thank you so much for it!
Can you please move into that subfamily Parapsalis species (Pa…
-
**Submitting author:** @daylinmorgan (Daylin Morgan)
**Repository:** https://github.com/brocklab/pycashier
**Branch with paper.md** (empty if default branch): joss
**Version:** v2024.1004
**Editor:** …