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Hello,
I follow the instruction to install but with little modifications. (I use conda envs)
```
conda create --name bonito python=3.7
conda activate bonito
git clone -b openvino https://github…
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Hi @hasindu2008 ,
Thank you for developing f5c !
I wonder know whether f5c eventalign can output basecalling kmer?
Generally, f5c eventalign will output the following header files.
contig posi…
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**Supervisor:** Bérénice Batut
**For degree:** Bachelor
**Status:** Open
**Keywords:** Metagenomics, microbiome, data analysis, training
# Global context
Emerging and powerful technologies li…
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Hi,
Thanks for the software to simulate nanopore reads. I get a bit confused while using the simulator.py with --number.
From the help message, --number suggests the number of reads to be simula…
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I was wondering why the `ctc_min_accuracy` (and `ctc_min_coverage`) CLI parameter was dropped when generating training data and now seems to be fixed at 0.99 (and 0.9, respectively).
I'm analysing …
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### The Issue
We have altered `dna/database_to_json.py` to now pull its data from a local mirror of the D3M Metalearning Database. The data in that database has a little more variety than the data …
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Hello
I was following the tutorial but when I reached the initiation of forge I typed
`forge init`
nothing created but instead I got this
`FORGE - training program for SNAP (version 2006-07-28)
…
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Epoch [1/3]
---------------------------------------------------------------------------
KeyError Traceback (most recent call last)
File :21, in _fwd_kernel(Q, K, V,…
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### Question
Hi, I am loading a JNLPBA dataset from the Flair library, and I would like to keep only the protein mentions, renaming them as "Gene." Additionally, I want to remove all other labels d…
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HI,
Thanks for providing PHIAF.
However, It seems your tool cannot predict the hosts for new viruses? Maybe a more detailed guideline should be provided for the user who wants to use PHIAF?
…