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Hello,
I'm trying to use snapATAC to analyze my drosophila single-cell ATAC data. Where would I find the drosophila version for the mouse gencode.vM16.gene.bed? What other drosophila-specific dat…
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**Describe the bug**
I am encountering an issue with the Trex tracking software while attempting to analyze the turning of flies. The software frequently flips between detecting the head and tail as …
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See cf. the fungus Drosophila depicted for the insect genus Drosophila:
http://dev.opentreeoflife.org/opentree/argus/otol.draft.22@1564871/Drosophila
this is not a high-priority, but I thought I'd me…
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In 5_tdr/3D reconstruction.ipynb, The provided file here is missing
`adata = st.sample_data.drosophila(filename="E7-9h_cellbin.h5ad")
`
Traceback (most recent call last):
File "/mnt/data/aim/fan…
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Hi, Heng!
We experimented with Drosophila melanogaster genome and found several strange things in minimap2 behaviour (Version: 2.8-r686-dirty). I've attached two our files for reproducing the issues …
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FB:FBgn0031604 Elp3
elongator is no longer thought to be a histone acetyltransferase:
Elp3 Elongator complex protein 3 histone acetylation FlyBase Drosophila melanogaster IMP protein FB:FB…
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When searching species/organism on https://geneontology.cloud/home
Drosophila gets one hit
-cGAS-Sting pathway (Drosophila)
and
D.mel gets 9
-all with D.mel in title
and
taxid:7227
0
and
…
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Hi,
I was wondering if you have a way of integrating the data collected from the Drosophila environmental monitors. In my case, I have 2 environmental monitors since I had two different incubators/…
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Hi,
I have the same issue "species not known"; though it works for 'human', but not for the 'drosophila' and 'anopheles'.
Manual installation
Repbase is not installed
Dfam release 3.4
./RepeatM…
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Hello,
I am using the function compareCluster for three different lists of genes (Drosophila melanogaster; flybase Fbgn). When I have the results I observe that not all the genes are used for the e…