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Hello Igor,
I am currently extracting STR from 1000 Genome WGS and a WES dataset.
When comparing the distributions of the STRs used in the catalog between the two datasets, I can see some discrep…
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Nice work,
Can we use BAMdash for the human whole genome or exome ? or we need to specify the target region as a reference file?
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Hi,
I would like to use your tool to create wes reads with CNVs but it fails with segmentation fault on $ref/SInC/SInC_simulate. After debugging a little bit, it looks like the reference file cre…
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Hi there!
I am asking a small issue regarding normalization step, `tri.counts.method` - I am normalizing to hg38 exome but not sure if this can be replaced by the hg19 metrics as the package defaul…
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Hi,
I am currently attempting to perform an association analysis on noncoding regions using WES data. However, while executing 379 array jobs, some of the jobs failed with an error. Could this iss…
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Hello,
I have data where the tumor samples have been sequenced for whole genome whereas the normal samples are whole exome. Can I run these samples as such with facets or should I extract exonic re…
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In the recent update to analysis_keys, the CramQC stage [now hard codes](https://github.com/populationgenomics/production-pipelines/blame/fa45bbb30c2c200241000699dec4b5259df76058/cpg_workflows/stages/…
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Hello,
I am trying to implement CN_Learn for calling copy number variants in a exome-seq dataset. But I am running into the error describe below:
```
> bash precheck.sh
STATUS: PROJ_DIR pa…
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Hi,
Great tool and documentation! I've read on your documentation page that the tool might work with whole exome data - could you please provide more information on that? Is possible and is it rec…