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### Description of the bug
Hi Developers,
I'm trying to run the Sarek implemented ASCAT for CNV analysis on WES data. On the nfcore Sarek website, it's suggested to follow 5 steps, as specified in…
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I ran mosdepth twice on the same WES samples and got different coverage values. I used the same exome intervals bed file and reference genome build (hg38). There version of mosdepth used was different…
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Hello,
We have a multisample bcf which was generated from a heterogenous exome data pool.
To generate the PED and MAP file, we used the command -
`time plink --bcf all_samples.bcf --recode ta…
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Line 6: ...."Exome Sequencing to identify genetic variations.... _you have 2 br tag_
Line 14: "(History options :: Create New)" ... _this seems to don't be interpreted as expected_
Line 32: "intro: "W…
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I would like to run QDNAseq on whole exome sequencing data (captured using SureSelect Human All Exon platform which covers about 50MB of the human exonic regions). Knowing this, how can I modify the Q…
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Hello,
I am trying to implement CN_Learn for calling copy number variants in a exome-seq dataset. But I am running into the error describe below:
```
> bash precheck.sh
STATUS: PROJ_DIR pa…
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Hi,
I am getting the below errors while loading the hg38 reference database and the hg38 covariate files
load("Exome/covariates_hg19_hg38_epigenome_pcawg.rda")
Error in load("Exome/covariate…
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I've implemented souporcell for mixture of six-samples. and I have whole exome sequencing results for individual samples (i.e. six .fastq files).
**Then, how do I identify the assocations between sou…
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┆Issue is synchronized with this [Jira Task](https://ucsc-cgl.atlassian.net/browse/ANVIL-569)
┆Issue Type: Task
┆Sprint: Backlog
┆containerName: AnVIL
┆Issue Number: ANVIL-569
┆Epic: QC Pipeline Dev…
kozbo updated
4 years ago
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Hi,
Is there a way to calculate % of coverage for each Exons from the BED file and BAM as input.?