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We currently cache genetic map files, and will soon be caching annotations too. But we have no mechanism for expiring the old cached data when updates occur. For example, consider the PonAbe genetic m…
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Hi,
I downloaded the genetic map for GRCh38 used in this paper: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7059836/
This genetic map is the one provided by Eagle and can be found here: https://alk…
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**Authors:** Frédéric Guillaume, Olivier Cotto, Max Schmid, Jobran Chebib
**Abstract:** Modelling eco-evolutionary dynamics is challenging yet necessary to predict the demographic, phenotypic and…
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Currently neuraminidase clades are being classified at a depth that does not show the full scope of genetic diversity. Neuraminidases need to be reclassified by splitting up current clades. After recl…
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Start time is 2024/06/12--12:53
KING 2.2 - (c) 2010-2019 Wei-Min Chen
The following parameters are in effect:
Binary File : /xxx/rare_variant/GRM/chrall.2082.mac1.filt.mind.gen…
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I am running phase_common on a BCF file (as well as variants to exclude in another BCF) acquired from an Axiom array.
While running, it gives an error stating that `AC field is needed in file` for …
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What are the good and bad of using an "average brain" for analysis? Given the massive genetic and phenotypical deviation between individuals, it would seem almost foolish to compare our models to some…
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Hello, I am having a lot of trouble finding the right recombination map. How do I generate the second column ( Locus ID) since most maps only give me genetic and physical position?
Also what shoul…
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must-have: position of units
could-have: per-battle balancing data
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Documentation on the fastsmc map file (https://github.com/PalamaraLab/ASMC/blob/main/docs/fastsmc.md#genetic-map-map) are unclear:
> The genetic map file needs to provide physical positions (in bas…