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Fauna output has (what I presume is) corrupted data for certain sequences such as:
```
>A/egret/Korea/22WC603/2023|avian_flu|EPIEPI2738274|2023-03-06|japan_korea|south_korea|south_korea|south_korea|…
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Dear @pango-designation,
Could I know the the sequences from lineages.csv file are all from GISAID or some from Genbank? Thanks.
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Jammu and Kashmir uploads a batch today, surprisingly, 89/94=95% of the seqs are XDK.1.
XDK.1+G22107A(S:K182R)
Note that this branch doesn't have S:G213E as in other XDK.1s. So there are two b…
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## Description
We have an old deviation open (https://github.com/Clinical-Genomics/Deviations/issues/471) that was caused by some odd upload behavior of MUTANT results to the GISAID database.
T…
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Sub-lineage of:JN.1
First: EPI_ISL_18819543, Japan, 2023-11-28
Latest: EPI_ISL_18944034,China, 2024-02-20
No. of seqs: 36( China 20 USA 8 Germany 4 Singapore 1 Japan 1 Poland 1 Oman 1 )
…
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It seems that there's many S:S31del lineages emerge now. This deletion was in previous variants but rather rare, however under BA.2.86* it seems much frequent.
A very interesting fact is that this…
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There seems to be a new EG.5.1.3/JN.3+S:F456V recombinant.
![image](https://github.com/sars-cov-2-variants/lineage-proposals/assets/10445944/2ba69ad6-ab50-448a-a6b7-24a64bccedba)
EG.5.1.3--#1160…
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On an undesignated branch of HV.1
with C4900T, G14346A
Gisaid Inquiry: G14346A,C5835T,C4900T (C4900T merely reduces sequence EPI_ISL_18440535 questionable early sequence of EG.5.1.6* with possible…
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EG.5.1.8+C12100G+C6606T(Orf1a:S2114F)+C21707T, A21708C(S:H49S)
GISAID query: C6606T, C21707T,A21708C
No. of seqs: 8( Myanmar 1 Malaysia 1 Singapore 6(1 from Thailand))
First: EPI_ISL_18361895, …
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Hello!
I'm hoping you can help shed some light on why Pangolin is now assigning a lineage of JN.1 to a sample it previously called JN.1.18. I'm attaching the COVID FASTA file as well as the combine…