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Example in http://graphdb.dumontierlab.com/resource?uri=http:%2F%2Fidentifiers.org%2FHGNC:8777
Should we use something else?
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Lets add details to this ticket at our next meeting.. Thanks for leading the very interesting conversation on this.
- Only SSSOM mappings maintained by OMIM should be released as part of OMIM relea…
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Currently frustrated when count matrix only has ENSG id, be it from ensemble or gencode
Is it possible for automation of ENSG conversion to HGNC symbol
Currently using biomart to identi…
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The goal is to use entrez gene_ids rather than hgnc symbols to link genes and transcripts, including dropping the hgnc column from the transcript table.
Phase 1:
* Update gene table schema and loa…
reece updated
4 months ago
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While I find the lists of TF names here (https://resources.aertslab.org/cistarget/tf_lists/), I cannot find anywhere which genes these TFs correspond to. I'd like to associate each TF in the list with…
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Via this API
https://www.genenames.org/help/rest/
we can get mane transcripts
For instance, here we can see the MANE select for FBN1
https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/…
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Can you publish and / or link to the final hgnc.owl? This is a great contribution!
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I'm seeing something similar to what was reported [here](https://github.com/NCATSTranslator/Feedback/issues/767) with some results being reported twice, with different identifiers:
The query is…
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# Background and discussion
_ontology-mondo.jsonl_ data file is collected by PIS following [this](https://github.com/opentargets/platform-input-support/blob/150bde8f6ed472d1e3c01a8eb22ee2c6b43e92d2/c…