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monarch-initiative
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monarch-mapping-commons
Building a fully exectuable workflow for boomer
Creative Commons Zero v1.0 Universal
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Removes some of the complex mapping processing and adds a few new mappings
#63
matentzn
closed
1 week ago
0
Update the URL for HGNC gene names
#62
ptgolden
closed
3 days ago
1
Simplify the ingest process and make source of monarch mp-hp-etc mappings more transparent
#61
cmungall
opened
2 months ago
3
Update sssom-api and blazegraph docker images for OxO2 instance
#60
anitacaron
closed
4 months ago
0
add upheno mappings
#59
jamesamcl
closed
6 months ago
0
Just ran `poetry update`
#58
hrshdhgd
closed
6 months ago
0
Fix MESH prefix
#57
kevinschaper
closed
8 months ago
0
swapped to keeping CHEBI-mesh mappings, then flip and keep mesh-CHEBI mappings
#56
kevinschaper
closed
8 months ago
0
flip pombase gene mapping direction to keep the ID we want in the subject_id column
#55
kevinschaper
closed
8 months ago
0
Add upheno-species independent mappings to mapping commons
#54
matentzn
opened
8 months ago
1
Adds NCBI to PomBase gene mappings
#53
kevinschaper
closed
8 months ago
0
Provide docs on how to stand up an OxO 2 instance
#52
matentzn
opened
8 months ago
0
Fix deploy pipeline
#51
matentzn
closed
8 months ago
2
Move gene mapping to mapping commons
#50
glass-ships
closed
10 months ago
6
use sssom converter instead
#49
glass-ships
closed
11 months ago
1
QC failing not related to the changes in PR
#48
anitacaron
closed
11 months ago
5
use obo converter to standardize some prefixes
#47
glass-ships
closed
11 months ago
0
Prefix for `mesh` not conform to OBO context
#46
anitacaron
closed
11 months ago
9
Deprecated classes: to include or not to include?
#45
matentzn
opened
11 months ago
0
HPO-Mesh and UMLS_HPO mappings
#44
hrshdhgd
closed
11 months ago
1
Explore UniProt API for gene mapping generation
#43
glass-ships
opened
12 months ago
1
Add HPO-MESH and HPO-UMLS mappings
#42
matentzn
closed
11 months ago
0
Add mondo cross mappings into mapping commons
#41
matentzn
opened
12 months ago
0
Add OBA mappings to Monarch Mapping Commons
#40
matentzn
opened
12 months ago
7
Deploy mappings to OxO2
#39
anitacaron
closed
8 months ago
1
update gene mapping url, remove now unnecessary makefile code
#38
glass-ships
closed
1 year ago
0
Monarch Gene Mappings not found
#37
anitacaron
closed
1 year ago
4
`poetry add tsvalid`
#36
hrshdhgd
closed
1 year ago
0
WIP: Add LOINC PART mappings
#35
matentzn
opened
1 year ago
5
Revert "Implement proper SSSOM validation"
#34
glass-ships
closed
1 year ago
0
Mapping set validation errors
#33
matentzn
closed
1 year ago
0
Implement proper SSSOM validation
#32
matentzn
closed
1 year ago
18
Make sure all mapping sets used by Monarch pass SSSOM validation
#31
matentzn
opened
1 year ago
0
Add `curie_map` to the mapping_sets listed in the registry.yml
#30
anitacaron
closed
1 year ago
9
Add OxO 2 prototype and deploy in Monarch infrastructure
#29
matentzn
closed
8 months ago
0
Adding upheno_custom_mapping preview
#28
souzadevinicius
closed
11 months ago
7
Adding upheno_custom_mapping preview
#27
souzadevinicius
closed
11 months ago
0
Move gene_mapping generation to this repo
#26
glass-ships
closed
10 months ago
1
Rewrite with new cookiecutter
#25
glass-ships
closed
1 year ago
0
Add Monarch-KG mappings
#24
glass-ships
closed
1 year ago
9
Update Mondo mappings and add gene mappings
#23
glass-ships
closed
1 year ago
7
Clean up Biomappings ingest
#22
cthoyt
closed
1 year ago
3
repair biomapping script, add basic mapping source info
#21
glass-ships
closed
1 year ago
1
Gene mapping suggestions
#20
matentzn
opened
1 year ago
10
Biomappings - getting wrong rows when generating
#19
glass-ships
closed
1 year ago
4
Biomappings - externalize/replace curie converter
#18
glass-ships
closed
11 months ago
6
Add biomappings for CTD ingest / Documentation updates
#17
glass-ships
closed
1 year ago
16
Be careful about subject/object distinctions in Monarch mapping commons?
#16
matentzn
opened
2 years ago
0
Create a working example for a large input (single line of code)
#15
matentzn
closed
2 years ago
1
Too hard example
#14
matentzn
closed
1 year ago
0
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