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ERROR: invalid or damaged sequence database to be searched by hhblits: /home/rpearson/Structure_Prediction_Tools/RaptorX-3DModeling/UniRef30_2020_03_hhsuite
ERROR: failed to run /home/rpearson/Struct…
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I tried to follow the example on [building a customized database](https://github.com/soedinglab/hh-suite/wiki#building-customized-databases) and got a segmentation fault.
## Expected Behavior
hh…
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We try to run conda activate RFAA
and we are getting the error:
CondaError: Run 'conda init' before 'conda activate'
and then we tried:
conda init
conda activate RFAA
and we are stil…
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Hi
I have downloaded the dataset following the DeepMind style and the inference works fine.
Currently, my data folder has: bfd mgnify pdb70 pdb_mmcif uniclust30 uniref90
May I ask how sho…
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Hello.
When running RoseTTAFold-All-Atom using the following input YAML config file, I observed that the inference code returned a `.pdb` file that contains a predicted protein structure with the f…
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Dear all,
I want to use hhblits to build my own database(1,040,000seqs). I followed the tutorial "Building customized databases", and the second step is to build an MSA with HHblits for each sequence…
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## Expected Behavior
HHblits command to generate MSAs in AlphaFold2 from BFD and UniRef30 databases should complete without errors.
## Current Behavior
The hhblits command in AlphaFold2 often fai…
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Hello. I was trying to fold a ssDNA and I get the above error.
Running HHblits
Running PSIPRED
Running hhsearch
Running RoseTTAFold2NA to predict structures
Running on GPU
ERROR: failed to loa…
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:exclamation: Make to check out our [User Guide](https://github.com/soedinglab/hh-suite/wiki).
I am trying to run alphafold (using the docker image in the current readme), but an error is encounter…
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Is there a recommended method for extracting the full sequences (i.e. not just the aligned part) of hits from an hhr file output by HHblits, or even from individual sequence ids?
In particular I wo…