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Hi,
I was wondering if I can plot the TADs in circos format in pyGenomeTracks, similar to the attached screenshot? I'm using the following version of hicExplorer.
--Python3/3.9.0
--hicexplorer/3…
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Hi there,
I'm experiencing an issue with hicPCA, where it gives a ValueError. I'm using python version 3.7.12 and hicexplorer version 3.7.2. Here is the command I run:
```
hiceMat=${genotype}.h5
…
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```
Job in error state.. tool_id: hicexplorer_hictraintadclassifier, exit_code: 1, stderr: Fontconfig error: No writable cache directories
Traceback (most recent call last):
File "/usr/local/bin/…
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**Welcome to the HiCExplorer GitHub repository! Before opening the issue please check
that the following requirements are met :**
- [ ] Search whether this issue (or a similar issue) has been sol…
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**Welcome to the HiCExplorer GitHub repository! Before opening the issue please check
that the following requirements are met :**
- [x] Search whether this issue (or a similar issue) has been sol…
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When I try to run hic2convert with _more_ than one processor, I get the following error -
```
Traceback (most recent call last):
File "/Users/aakashsur/.virtual/default/bin/hic2cool", line 8, …
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Hi,
I downloaded the new version of HiCExplorer with conda and then also did:
git clone https://github.com/deeptools/HiCExplorer/
cd HiCExplorer
git checkout aggregateGenome
hicex_git_dir=$(pw…
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I tried to install the HiCAssembler according to the instruction provided by developers, but there is a conflict between the version of hicexplorer (and also cooler) and HiCAssembler. Whereas Hicexpl…
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**Welcome to the HiCExplorer GitHub repository! Before opening the issue please check
that the following requirements are met :**
- [ ] Search whether this issue (or a similar issue) has been sol…