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As DSA works wonders on our test servers, we were interested in deploying it on a larger server, but where security and robustness becomes more relevant.
As a pilot, we wanted to deploy it on a HUN…
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Thank you for creating this intereseting tool!
I have been struggling to install Starfysh following the installation guide. I get the conflicting below.
ERROR: Cannot install large-image and la…
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Hi, when importing the docker image, I do not see an option to login on a private docker registry. What would be the best way to handle this?
Thanks
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If you open the hierarchy widget to select a folder, this code https://github.com/DigitalSlideArchive/girder_volview/blob/main/girder_volview/web_client/views/itemPage.js#L9 can cause a console error,…
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Python Histomicstk package should be adjusted to include `xml` files and to expose the clis on the command line.
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### High priority
- [x] Add a WSI reader (read a wsi into Xarray and then transform to a SpatialData object)
- [x] Add whole tissue segmentation + conversion to a `shapely` polygon
- [x] Support m…
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I am facing issue,s particularly in the implementation suggested by HistomicsTK, from the code below
```
CWD = os.getcwd()
APIURL = 'http://candygram.neurology.emory.edu:8080/api/v1/'
SAMPLE_S…
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Hi,
I am stuck while deplying histomicsUI with girder . I have installed histomicsUI plugin in girder, then i have configured nginx reverse proxy for my server to be visible on my local network. How…
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Hi,
I am installing HIstomicsTK in Anaconda (Windows 10, Python 3.9) using the introduction from README
Installation seems fine without error.
However, I got the below error when importing the …
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It would be helpful to have an overview panel like this one in the top left of the image that shows the overall image and a little box covering where the current field of view is. I believe @manthey a…