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I've been trying to run `vcf2sarge` but sarge doesn't seem to be able to find htslib. I've installed htslib from [here](http://www.htslib.org/download/) (and also tried downloading from github), insta…
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Do we have an equivalent of this?
https://github.com/rust-bio/rust-htslib/blob/622a0996fee4c03674bfcebd16c3876258c28a5b/src/bam/record.rs#L1999-L2008
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Hi There,
Thanks for making Kled available for the community.
I would like to have a try.
I encountered an error, listed below, while installing this software.
Can you please help me sort it …
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Hi,
I am trying to lumpy in centos7 machine. after downloading the package by git clone
i get following error:
``[root@localhost NEW_program]# git clone --recursive https://github.com/arq5x/l…
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I tried to upgrade my code's dependency on rust-htslib to version 0.47.0 (from 0.46.0) but now when I do `cargo build -r` on Linux (eg in a docker container) without `clang`, I get:
```
thread 'ma…
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Many htslib functions return error codes. We often don't check them, and I also just found a place (since fixed) where I did but should not have. We should look at these more closely.
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The installation doc is not clear.
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Ubuntu 18.04
htslib 1.15.1-19-g3c44c0b
"liftover" at 1.21-25-g9d314180
80 cpu
512GB RAM
I am attempting to liftover a VCF of ~5 million variants for a single sample. I have tried a BCF, and ind…
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I've installed angsd=0.910 and htslib from the bioconda channel.
Once installed the angsd binary from the bioconda channel depends on a missing libhts.so file.
Here's a minimal environment file …
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Hi,
During the compilation cmake returns me this error:
```
install -p -m 644 htslib/*.h /user/work/tk19812/software/hypo-assembler/overlap/libs/htslib-1.9/include/htslib
install -p -m 644 lib…