blachlylab dhtslib issues

blachlylab / dhtslib

D bindings and OOP wrappers for htslib

MIT License

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issues

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GFF3Reader can't handle with comment lines in middle of file

#140 charlesgregory opened 1 year ago
0
VCFRecord.filter doesn't return correct set of filters

#139 charlesgregory opened 2 years ago
2
Thread pool

#138 charlesgregory opened 2 years ago
2
v0.14.0+htslib-1.16

#137 charlesgregory closed 2 years ago
1
Update htslib bindings to Htslib 1.16

#136 charlesgregory closed 2 years ago
4
Update bindings to Htslib 1.15

#135 charlesgregory closed 2 years ago
0
Update bindings to Htslib 1.14

#134 charlesgregory closed 2 years ago
0
Rework reader/writers to use HtslibIterator and HtslibFile across dhtslib

#133 charlesgregory opened 2 years ago
0
Update bindings to htslib 1.15

#132 charlesgregory opened 2 years ago
0
Release v0.14.0+htslib-1.13

#131 charlesgregory closed 2 years ago
1
Update the Dstep folder after #129

#130 charlesgregory closed 2 years ago
1
Dstep Bindings V2

#129 charlesgregory closed 2 years ago
1
HtslibFile and HtslibIterator

#128 charlesgregory closed 2 years ago
1
bam_aux_update_int fails non-deterministically

#127 charlesgregory opened 2 years ago
0
Test DMD compiler and MacOS via github actions

#126 charlesgregory closed 2 years ago
1
Vcf improvements and fixes

#125 charlesgregory closed 2 years ago
2
FormatField can return strings with NULs

#124 charlesgregory closed 2 years ago
0
Linker postblit fix

#123 charlesgregory closed 2 years ago
2
Linker issues when using SAMRecord in an array

#122 charlesgregory closed 2 years ago
4
Updates to dstep bindings generation

#121 charlesgregory closed 2 years ago
4
Version check warning

#120 charlesgregory opened 3 years ago
1
Solidify process of updating bindings

#119 charlesgregory closed 2 years ago
3
Update bindings to htslib 1.14

#118 charlesgregory opened 3 years ago
0
VCFWriter output modes

#117 charlesgregory closed 2 years ago
0
VCFWriter ctor incorrect

#116 charlesgregory closed 2 years ago
4
Get valid coordinates from Interval

#115 charlesgregory opened 3 years ago
1
Interval length

#114 charlesgregory closed 2 years ago
0
Release v0.13.3+htslib-1.13

#113 charlesgregory closed 3 years ago
1
GFF3 coordinate offsets don't make sense

#112 jblachly opened 3 years ago
3
Coordinate subpackage

#111 charlesgregory closed 3 years ago
2
Make iterator-wrapping Ranges into Forward Ranges

#110 charlesgregory closed 3 years ago
0
Htslib package changes

#109 charlesgregory closed 3 years ago
2
Reference Counting fixes and consolidation

#108 charlesgregory closed 3 years ago
12
Reference counting implementation is incorrect

#107 charlesgregory closed 3 years ago
5
Convert integration unit tests to true unit tests

#106 charlesgregory opened 3 years ago
0
VCF Overhaul

#105 charlesgregory closed 3 years ago
3
Isolate coordinates.d

#104 charlesgregory closed 3 years ago
2
memory leak in `sam.RecordRange`

#103 jblachly closed 3 years ago
0
Rebranding (name change)

#102 jblachly opened 3 years ago
4
`Interval` (and `Coordinate`) should probably include contig name

#101 jblachly opened 3 years ago
0
Bai index warning sometimes unnecessary

#100 charlesgregory closed 3 years ago
1
Functional style `Optional` and `Result` return types

#99 jblachly opened 3 years ago
0
hts_parse_region binding may be wrong

#98 charlesgregory closed 3 years ago
1
htslib unittests

#97 charlesgregory opened 3 years ago
1
VCF Overhaul

#96 charlesgregory closed 3 years ago
0
Default dub configuration

#95 charlesgregory closed 3 years ago
1
dhtslib.vcf.record poor test coverage

#94 jblachly closed 3 years ago
1
dhtslib versioning

#93 charlesgregory closed 3 years ago
1
getAlignedPairs doesn't use Coordinates

#92 charlesgregory closed 3 years ago
1
rust-htslib `read_pos`

#91 jblachly opened 3 years ago
2