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When loading TIFF files using the standard SCIFIO `Context` (which does not include ImageJ services), SCIFIO needs the list of `Codec` objects, which triggers a call to `ObjectIndex.get(Codec.class)`,…
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Greetings, I am trying to run ImageJ/Fiji JavaScripts from within MATLAB. It seems that the transition to Java 8 is a rocky road. I was able to follow all the helpful instructions to get ImageJ runnin…
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I ran the following macro
```
// @OpService ops
// @Dataset inputData
import net.imagej.ops.Ops
import net.imglib2.img.display.imagej.ImageJFunctions
import net.imglib2.type.numeric.intege…
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Hi,
I'm attaching an imageJ Fiji script of batch detection for validation of network outcome.
The script basically covers the primary parameters needed to run the detection with basic ImageJ wrapp…
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The auto-enabling of the micromanager-dev update site is confusing, as there is no indication that it is tied to OpenSPIM.
When disabling micromanager-dev without disabling OpenSPIM, micromanager att…
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Currently, legacy-compatible IJ2 commands end up in a menu group separate from IJ1 plugins, e.g. the `Debug`, `Sandbox`, `AutoRun`, `Kymograph` and `Scripting` submenus of the *Plugins* menu are in a …
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Would it be possible to correct logger level for the following commands?
Otherwise nextflow pipeline capture that as error
```
/opt/fiji/entrypoint.sh --update add-update-site PTBIOP http://biop.…
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Hi
When launching ImageJ from MATLAB I get the errors bellow telling me that some scripts cannot be loaded. However I checked the paths and the files are there.
Tjh IJM and MIJ objects are create…
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As mentioned on https://imagej.net/plugins/miji, this legacy project is mostly replaced by the functionality in ImageJ-MATLAB:
https://imagej.net/scripting/matlab#running-imagej2-within-matlab
…
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I recently downloaded and used the MiNA plug in successfully. However today every time I try to use it I get the following error message. I have tried uninstalling it and re-installing and this did no…