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Task http://toxcreate2.in-silico.ch/task/4333 failed with message: "more predicted than test compounds test:7 < prediction:8". Here is the error report:
http://www.opentox.org/api/1.1#errorReport: !r…
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Hi,
I have it working for unlabeled data, but I did a discovery run for TMT to determine targets from DIA, but I can't seem to search it properly.
I am doing everything like unlabeled, but putti…
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## Overview
Although Series 4 is the current _de facto_ series of interest, there seem to be some open questions regarding series 3 (S3). For example, it is still unknown which target is hit by se…
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I tried this out, but the in silico pcr would only return results if there were no IUPAC ambiguities in the primers. Otherwise, it works quite nicely
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Hi Vadim,
As always, thank you for developing this excellent tool. We performed library-free mode search against a FASTA file and in the identified peptides, we found a few do not follow trypsin di…
llniu updated
2 years ago
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Hi,
I am a new user of DIA-NN.
I setup a first DIA-NN run using a DB of ~70k entries and 19 samples and it took less than 1 day to finish.
Now, I am using the same settings (see attached pic), but …
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Hi Ming @mwang87 !
I, @lfnothias, and @hoseinmohimani have several requests & suggestions about updating [In Silico Tools](https://gnps.ucsd.edu/ProteoSAFe/static/gnps-theoretical.jsp) webpage. Some …
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@anneodonnell commented on [Wed Jun 26 2019](https://github.com/broadinstitute/seqr/issues/924)
pext scores are Beryl's transcript aware expression score. I was hoping it could be added to the in sil…
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Dear @vdemichev,
I was checking the predicted library prior to a search and as expected some of the (unknown) modifications do not have predictions that accounts for the modification (e.g., --var-…