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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/KrasnitzLab/RAIDS
Confirm the following by editin…
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Hello,
Would it be possible for you to share the original .gtf you used to generate the pre-built index (https://labshare.cshl.edu/shares/mhammelllab/www-data/TElocal/prebuilt_indices/hg38_rmsk_TE.…
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Hello!
I created TE.gtf file for use with TEtranscripts.
I get error "Error in building TE index "
Please, check my TE.gtf
What is wrong in my annotations?
Thanks!!
[sltk_bed_mod.gtf.zip](ht…
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**Summary**
Hi @Nicholas-Schaub, I identified multiple issues with OME Zarr Converter Plugin.
**What is the current *bug* behavior?**
1. Using `--fileExtension .abcdef` just produces output f…
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Hi there,
I am trying to use a custom list of transposable elements that can be found here: https://github.com/bergmanlab/drosophila-transposons/tree/master/current. I used the [makeTEgtf](http://l…
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Hi,
I can't access the FTP server. When using curl to download the datasets, I'm getting a:
`curl: (56) response reading failed`
And using the FTP command also fails with:
`421 Service not avail…
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Hey Oliver,
I tried running TEsmall on a few files, I get this in my standard error file -
```
2022-08-03 10:52:05,198 INFO Checking if reference genome and annotation files exist...
2022-08-03…
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I'm constantly getting a "Gateway time out" error when I try to access http://labshare.cshl.edu/shares/gingeraslab/www-data/dobin/STAR/STARgenomes/
Is there anyone else having the same problem?
…
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Hello,
I am working with small RNAs in species that are not in the list of supported organisms. I was wondering whether it is possible to use genomes other than those speciefied in the download s…
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as7a5 updated
2 years ago